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@ngs-mstb NGS-MSTB - Next Generation Sequencing Microbial Surveillance Toolbox for scalable de-novo assembly of viral genomes and bacterial genes

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    9 repositories

    • micgent

      Public
      The main back-end component of NGS-MSTB: Next Generation Sequencing Microbial Surveillance Toolbox
      Python
      •
      Other
      •1•3•0•0•Updated Jan 30, 2021Jan 30, 2021

    • ngs-mstb-docker

      Public
      Containerized deployment of NGS-MSTB
      Shell
      •
      Other
      •0•0•0•0•Updated Dec 11, 2020Dec 11, 2020

    • ngs-mstb-conda

      Public
      Recipes for the custom Conda packages in NGS-MSTB system
      Python
      •
      Other
      •1•0•0•0•Updated Sep 16, 2020Sep 16, 2020

    • toil

      Public
      Fork of Toil workflow engine created for making patches
      Python
      •
      Apache License 2.0
      •240•0•0•0•Updated Dec 31, 2019Dec 31, 2019

    • ariba

      Public
      Fork of ARIBA for submitting patches
      Python
      •
      Other
      •55•0•0•0•Updated Dec 31, 2019Dec 31, 2019

    • micgent_db

      Public
      Reference data needed by MICGENT package
      0•0•0•0•Updated Dec 31, 2019Dec 31, 2019

    • ngs-mstb-secrets

      Public
      Example multi-target config for deploying ngs-mstb-docker
      HTML
      •
      Other
      •0•0•0•0•Updated Dec 31, 2019Dec 31, 2019

    • pilon

      Public
      Fork of Pilon for making patches
      Scala
      •
      GNU General Public License v2.0
      •60•0•0•0•Updated Dec 10, 2019Dec 10, 2019

    • Fastaq

      Public
      Fork of Pyfastaq for patching
      Python
      •
      Other
      •21•0•0•0•Updated Dec 10, 2019Dec 10, 2019