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NGS-MSTB - Next Generation Sequencing Microbial Surveillance Toolbox for scalable de-novo assembly of viral genomes and bacterial genes

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  1. micgent micgent Public

    The main back-end component of NGS-MSTB: Next Generation Sequencing Microbial Surveillance Toolbox

    Python 3 1

Repositories

Showing 9 of 9 repositories
  • micgent Public

    The main back-end component of NGS-MSTB: Next Generation Sequencing Microbial Surveillance Toolbox

    ngs-mstb/micgent’s past year of commit activity
    Python 3 1 0 0 Updated Jan 30, 2021
  • ngs-mstb-docker Public

    Containerized deployment of NGS-MSTB

    ngs-mstb/ngs-mstb-docker’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 11, 2020
  • ngs-mstb-conda Public

    Recipes for the custom Conda packages in NGS-MSTB system

    ngs-mstb/ngs-mstb-conda’s past year of commit activity
    Python 0 1 0 0 Updated Sep 16, 2020
  • toil Public Forked from DataBiosphere/toil

    Fork of Toil workflow engine created for making patches

    ngs-mstb/toil’s past year of commit activity
    Python 0 Apache-2.0 246 0 0 Updated Dec 31, 2019
  • ariba Public Forked from sanger-pathogens/ariba

    Fork of ARIBA for submitting patches

    ngs-mstb/ariba’s past year of commit activity
    Python 0 56 0 0 Updated Dec 31, 2019
  • micgent_db Public

    Reference data needed by MICGENT package

    ngs-mstb/micgent_db’s past year of commit activity
    0 0 0 0 Updated Dec 31, 2019
  • ngs-mstb-secrets Public

    Example multi-target config for deploying ngs-mstb-docker

    ngs-mstb/ngs-mstb-secrets’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 31, 2019
  • pilon Public Forked from broadinstitute/pilon

    Fork of Pilon for making patches

    ngs-mstb/pilon’s past year of commit activity
    Scala 0 GPL-2.0 61 0 0 Updated Dec 10, 2019
  • Fastaq Public Forked from sanger-pathogens/Fastaq

    Fork of Pyfastaq for patching

    ngs-mstb/Fastaq’s past year of commit activity
    Python 0 21 0 0 Updated Dec 10, 2019

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