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    29 repositories

    • HDP_scoping_review

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • project-template

      Public template
      R
      •
      MIT License
      •1•1•1•0•Updated Nov 26, 2024Nov 26, 2024

    • lemaslab.github.io

      Public
      The LemasLab website at the University of Florida
      Python
      •40•1•4•4•Updated Nov 16, 2024Nov 16, 2024

    • OMOP2OBO

      Public
      OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
      Jupyter Notebook
      •
      MIT License
      •12•0•0•0•Updated Sep 21, 2024Sep 21, 2024

    • BEACH-reports

      Public
      HTML
      •
      MIT License
      •53•1•11•0•Updated Sep 19, 2024Sep 19, 2024

    • CAMP

      Public
      predicting peptide-protein interactions
      Python
      •31•2•7•2•Updated Feb 17, 2024Feb 17, 2024

    • ehr-database

      Public
      Explore descriptive statistics of data we have
      R
      •0•0•6•0•Updated Nov 21, 2023Nov 21, 2023

    • hmdbtaxonomy

      Public
      R
      •
      Other
      •0•0•0•0•Updated Sep 12, 2023Sep 12, 2023

    • nlp-perinatal

      Public template
      this repo contains code for the analysis of perinatal clinical notes
      R
      •
      MIT License
      •0•0•2•2•Updated Jul 3, 2023Jul 3, 2023

    • ehr-preeclampsia-model

      Public
      Use mom-baby EHR to validate ShinyApp model. The goal of the project is to predict infant delivery for mothers with preeclampsia.
      HTML
      •0•2•3•1•Updated May 10, 2023May 10, 2023

    • awc_lcms_metabolomics

      Public
      The objective of this study is to develop an automated workflow composition system for LC-HRMS metabolomics data processing.
      Shell
      •
      MIT License
      •0•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • BEACH

      Public
      The Breastfeeding and EArly Child Health (BEACH) Study
      4•0•7•0•Updated Sep 15, 2022Sep 15, 2022

    • pediatric-abx-mod

      Public
      UFHealth Mom-baby linked electronic health records
      R
      •0•0•1•0•Updated Jul 8, 2022Jul 8, 2022

    • BEACH-cdrisc

      Public
      HTML
      •0•0•0•0•Updated Apr 26, 2022Apr 26, 2022

    • r-demo

      Public
      space to demo r-packages that can be moved to other projects.
      R
      •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

    • BEACH-EHR-PRESENTATION

      Public
      Information regarding presentation on the extraction of data from the Epic EHR database.
      data-sciencehealthelectronicrecordepic
      R
      •
      MIT License
      •0•2•1•0•Updated Mar 17, 2022Mar 17, 2022

    • gatorberry

      Public
      build a raspberry pi cluster with SLURM installed and assemble viral genome
      R
      •
      MIT License
      •1•0•0•1•Updated Feb 4, 2022Feb 4, 2022

    • reproducible_metabolomics_study_checklist

      Public
      Checklist for making computational steps of clinical metabolomics study reproducible
      MIT License
      •0•1•1•0•Updated Dec 1, 2021Dec 1, 2021

    • Informatics_Team_Meeting_Schedule

      Public
      Meeting Schedule of Lemas Lab Informatics Team at University of Florida
      MIT License
      •2•0•0•0•Updated Oct 13, 2021Oct 13, 2021

    • rump

      Public
      A Reproducible Untargeted Metabolomics Data Processing Pipeline
      machine-learningbig-datareproducible-researchstatistical-analysismass-spectrometrydockernextflowsingularitypathway-analysismetabolomics-data
      HTML
      •
      MIT License
      •8•11•21•0•Updated Mar 18, 2021Mar 18, 2021

    • Manuscript-DNNs-for-Classification-of-LCMS-Peaks

      Public
      Code associated with the manuscript: Deep Neural Networks for Classification of LC-MS Spectral Peaks
      R
      •
      Other
      •8•0•0•0•Updated Jan 11, 2021Jan 11, 2021

    • ampliseq

      Public
      16S rRNA amplicon sequencing analysis workflow using QIIME2
      Nextflow
      •
      MIT License
      •124•0•0•0•Updated Dec 18, 2020Dec 18, 2020

    • Docker

      Public
      R
      •
      MIT License
      •0•0•2•0•Updated Aug 12, 2020Aug 12, 2020

    • BEACH-interview

      Public
      data analysis for BEACH interview study in 40 pregnant and breastfeeding women in Alachua County
      R
      •0•0•0•1•Updated Aug 10, 2020Aug 10, 2020

    • nlp-recipes

      Public template
      Natural Language Processing Best Practices & Examples
      Python
      •
      MIT License
      •917•0•0•0•Updated Jul 24, 2020Jul 24, 2020

    • shiny-app-template

      Public
      Template for creating Shiny web applications
      Python
      •5•0•0•0•Updated Mar 20, 2020Mar 20, 2020

    • RAnalysisSkeleton

      Public
      Files and settings commonly used in analysis projects with R
      R
      •
      GNU General Public License v2.0
      •21•0•0•0•Updated Feb 13, 2020Feb 13, 2020

    • microbes

      Public
      R
      •0•0•0•0•Updated Jun 20, 2019Jun 20, 2019

    • GEI

      Public
      R
      •0•0•0•0•Updated Jun 20, 2019Jun 20, 2019