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@gorpipe GORpipe

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    9 repositories

    • gor

      Public
      GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
      pythonopen-sourcebioinformaticsgwasscalasparkgenomicsgeneticsvcfsoftware
      Java
      •
      GNU Affero General Public License v3.0
      •13•41•7•0•Updated Dec 30, 2024Dec 30, 2024

    • gor-test-data

      Public
      This repository contains test data needed for running tests within the GOR repository
      FreeMarker
      •2•2•0•0•Updated Nov 28, 2024Nov 28, 2024

    • homebrew-gor

      Public
      Homebrew repository for gor
      Ruby
      •1•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • gor-spark

      Public
      Relational query engine that unites SparkSQL and GORpipe into a single declarative query framework.
      Java
      •
      GNU Affero General Public License v3.0
      •1•6•0•0•Updated Nov 25, 2022Nov 25, 2022

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Nov 22, 2022Nov 22, 2022

    • gorpiper

      Public
      R library for running GOR commands locally from R
      R
      •
      Other
      •0•0•0•0•Updated Jun 23, 2022Jun 23, 2022

    • gor-pyspark

      Public
      python helper functions for gor-spark
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 7, 2022Jun 7, 2022

    • notebooks

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 14, 2022Jan 14, 2022

    • gorpipe.github.io

      Public
      Ruby
      •0•0•0•0•Updated Nov 1, 2021Nov 1, 2021