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@epimodels Computing for Epidemiology

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    34 repositories

    • StatsThinking_2024

      Public
      GitHub Repository for BIOMEDSCI 522, Fall 2024
      The Unlicense
      •19•0•1•1•Updated Sep 24, 2024Sep 24, 2024

    • CougConnect

      Public
      Script and other stuff
      R
      •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

    • Gillespie.jl

      Public
      Stochastic Gillespie-type simulations using Julia
      Jupyter Notebook
      •
      Other
      •24•0•0•0•Updated Jan 28, 2024Jan 28, 2024

    • StaffRatios

      Public
      'Data and Code for Healthcare Worker Staffing Ratios Affect Methicillin-Resistant Staphylococcus aureus Acquisition'
      Papyrus
      •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • pullman_COVID

      Public
      Two-population Model of SARS-CoV-2 within a University and Community Populations for Pullman, WA
      R
      •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • Presentations

      Public
      A repository of past posters and presentations by members of the Lab
      0•0•0•0•Updated Jun 23, 2023Jun 23, 2023

    • SERSymposia

      Public
      A collection of symposium proposals for past Society for Epidemiological Research meetings.
      0•1•0•0•Updated Jun 23, 2023Jun 23, 2023

    • lab_documents

      Public
      Lofgren Lab Guidelines, Resources and other Administrative Information
      Shell
      •1•2•0•0•Updated May 26, 2023May 26, 2023

    • NetworkXTesting

      Public
      Python
      •0•0•0•0•Updated Apr 19, 2023Apr 19, 2023

    • macbeth

      Public
      Python
      •0•2•0•0•Updated Dec 19, 2022Dec 19, 2022

    • stochpy

      Public
      StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•0•0•0•Updated Nov 14, 2022Nov 14, 2022

    • Metapopulation_MRSA

      Public
      Code Repository for "Population Structure Drives Differential Methicillin-resistant Staphylococcus aureus Colonization Dynamics"
      Papyrus
      •0•0•0•0•Updated Jul 14, 2022Jul 14, 2022

    • mixing_pattern

      Public
      Python
      •0•0•0•0•Updated May 27, 2022May 27, 2022

    • AnalysisInEpi

      Public
      Repository for WSU VET_PATH 571-02, Spring 2019
      R
      •2•1•0•0•Updated Feb 16, 2022Feb 16, 2022

    • transientdynamics

      Public
      Code for 'Transient Dynamics of Infection Transmission in a Simulated Intensive Care Unit`
      Papyrus
      •
      The Unlicense
      •0•0•0•0•Updated Dec 7, 2021Dec 7, 2021

    • EpiSpring21

      Public
      Course Repository for VetPath 571, Spring 2021
      R
      •1•0•0•0•Updated Apr 26, 2021Apr 26, 2021

    • inperson_sports

      Public
      Code and data for 'Excess Risk of COVID-19 to University Populations Resulting from In-Person Sporting Events'
      Python
      •0•0•0•0•Updated Sep 28, 2020Sep 28, 2020

    • COVIDstuff

      Public
      R
      •1•0•0•0•Updated Jul 7, 2020Jul 7, 2020

    • coug_contagion

      Public
      Simulation of an SEIR epidemic on student contact network
      Python
      •
      MIT License
      •0•0•0•0•Updated May 29, 2020May 29, 2020

    • COVID19-Jails

      Public
      A repository for the code from 'The Epidemiological Implications of Jails for Community, Corrections Officer, and Incarcerated Population Risks from COVID-19'
      HTML
      •3•4•0•0•Updated May 13, 2020May 13, 2020

    • prusaslicer-lulzbot-taz

      Public
      Lulzbot TAZ printer and material profiles for use with PrusaSlicer.
      GNU Affero General Public License v3.0
      •5•0•0•0•Updated Feb 19, 2020Feb 19, 2020

    • protective_decol

      Public
      Code and data repository for 'Assessing the Potential of a Long-acting Skin Disinfectant in the Prevention of MRSA Transmission'
      Papyrus
      •0•0•0•0•Updated Jan 31, 2020Jan 31, 2020

    • chg_bathing

      Public
      Code Repository for 'Estimating the Per-Application Effectiveness of Chlorhexidine Gluconate and Mupirocin in Methicillin-resistant Staphylococcus aureus Decolonization in Intensive Care Units'
      Papyrus
      •0•0•0•0•Updated Nov 19, 2019Nov 19, 2019

    • Paper-3

      Public
      Clean Paper 3
      Papyrus
      •0•0•0•0•Updated Sep 13, 2019Sep 13, 2019

    • epicookbook

      Public
      Model code from epicookbook, a cookbook of epidemiological models
      R
      •
      MIT License
      •1•0•0•0•Updated Jul 17, 2019Jul 17, 2019

    • academic-kickstart

      Public
      Easily create a beautiful website using Academic and Hugo
      Shell
      •
      MIT License
      •6.4k•0•0•0•Updated Jul 8, 2019Jul 8, 2019

    • netzwerk

      Public
      A test project wrapping modern C++ with Python using setuptools, CMake, pybind11, and GoogleTest
      C++
      •0•0•0•0•Updated Jul 3, 2019Jul 3, 2019

    • ModelingID

      Public
      Repository for WSU VET_PATH 571-03, Spring 2018
      R
      •0•1•0•0•Updated Apr 25, 2018Apr 25, 2018

    • ModelingInfectiousDisease

      Public
      Repository for WSU VET_PATH 571-03, Spring 2018
      0•0•0•0•Updated Feb 16, 2018Feb 16, 2018

    • contactchange

      Public
      Code repository "Bias Induced by Post Randomization Changes in Staff Behavior in Infection Prevention Trials"
      Python
      •0•0•0•0•Updated Jun 28, 2017Jun 28, 2017