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    18 repositories

    • tRNACAD

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•1•Updated Jun 27, 2023Jun 27, 2023

    • towards-fail-safe-genomics

      Public
      MIT License
      •0•0•0•0•Updated Jun 3, 2023Jun 3, 2023

    • codon-tables

      Public
      Code relating to arbitrary DNA decoding and codon table representation, visualization and optimization
      Jupyter Notebook
      •1•3•0•3•Updated Dec 8, 2022Dec 8, 2022

    • bionet-synthesis

      Public
      Python
      •
      MIT License
      •3•10•5•7•Updated Jun 21, 2022Jun 21, 2022

    • TranslationDynamics

      Public
      Code for single-molecule resolution simulation, analysis, and visualization of translation
      Jupyter Notebook
      •0•1•0•0•Updated Nov 11, 2021Nov 11, 2021

    • opentrons

      Public
      Code relating to the OpenTrons liquid handling robots.
      Roff
      •0•9•24•1•Updated Oct 27, 2020Oct 27, 2020

    • synmyco

      Public
      For synthetic mycology.
      1•1•0•0•Updated Apr 20, 2020Apr 20, 2020

    • platereaderlib

      Public
      Simple library for reading data from SpectraMax and Victor3 platereaders.
      Python
      •0•0•0•0•Updated Jul 8, 2019Jul 8, 2019

    • ops-qrcode

      Public
      QR code generator for operations and instruments
      HTML
      •0•0•0•0•Updated Nov 14, 2018Nov 14, 2018

    • ff-test-suite

      Public
      A project to find candidate charismatic proteins that are expressable with a reduced set of amino acids
      Python
      •0•0•0•0•Updated Sep 10, 2018Sep 10, 2018

    • FreeGenes

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jun 26, 2018Jun 26, 2018

    • synbiolib

      Public
      Python
      •0•0•0•0•Updated Apr 30, 2018Apr 30, 2018

    • spaceballs

      Public
      Code for setting up and analyzing brownian motion simulations of hard discs and spheres using the Smoldyn simulation package
      Python
      •
      MIT License
      •0•1•1•0•Updated Oct 19, 2017Oct 19, 2017

    • bioe80-dnavalidator

      Public
      CSS
      •0•0•0•0•Updated Jul 27, 2017Jul 27, 2017

    • opentrons-api

      Public
      Python API for writing protocols and running them on Opentrons robots
      Python
      •
      Apache License 2.0
      •178•0•0•1•Updated Jul 5, 2017Jul 5, 2017

    • Gene-Mining-Scripts

      Public
      Contains all scripts interfacing with EcoCyc & other databases to mine genes
      Jupyter Notebook
      •0•1•0•0•Updated Oct 28, 2016Oct 28, 2016

    • ShadowProteome

      Public
      Mapping the shadow genome to the E. coli proteome
      Jupyter Notebook
      •0•0•0•0•Updated Aug 30, 2016Aug 30, 2016

    • PythonCyc

      Public
      Python
      •
      MIT License
      •6•0•0•0•Updated Dec 25, 2015Dec 25, 2015