Repositories list

• GSDB

  Public
  The scripts, web pages, and documents of the genome structure database (GSDB)

  JavaScript

  •4•3•0•0•Updated Mar 9, 2023Mar 9, 2023

• Hierarchical3DGenome

  Public
  A hierarchical algorithm for building high-resolution 3D genome structures

  3•5•4•0•Updated Mar 9, 2023Mar 9, 2023

• LorDG

  Public
  3D genome reconstruction with Lorentzian objective function

  Java

  •1•9•1•0•Updated Nov 16, 2019Nov 16, 2019

• ClusterTAD

  Public
  A clustering method for identifying topologically associated domains (TADs) from Hi-C data

  MATLAB

  •2•4•1•0•Updated Dec 14, 2018Dec 14, 2018

• 3DMax

  Public
  A maximum likelihood method for reconstructing 3D chromosome structure from chromosomal contact data

  Java

  •5•8•1•0•Updated Mar 1, 2018Mar 1, 2018

• MOGEN

  Public
  The software for modeling the 3D structure of a genome using Hi-C chromosome conformation capturing data

  Java

  •

  GNU General Public License v3.0

  •3•8•2•0•Updated Feb 9, 2018Feb 9, 2018