openvax / vaxrank Public

Notifications You must be signed in to change notification settings
Fork 22
Star 54

Code
Issues 44
Pull requests 2
Actions
Projects
Security
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Projects
Security
Insights

Issues: openvax/vaxrank

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

44 Open 72 Closed

Author

Filter by author

Label

Filter by label

Use alt + click/return to exclude labels

or ⇧ + click/return for logical OR

Projects

Filter by project

Milestones

Filter by milestone

Assignee

Filter by who’s assigned

Assigned to nobody

Sort

Sort by

Newest Oldest Most commented Least commented Recently updated Least recently updated Best match

Most reactions

Issues list

Vaxrank 1.4.0 ignores --min-alt-rna-reads lower value than default

#203 opened Sep 18, 2024 by julia326

Add more predictions to EpitopePrediction

#201 opened May 10, 2024 by iskandr

Make scoring, filtering, and ranking rules configurable

#199 opened Apr 28, 2024 by iskandr

Build issues with jinja2.ext

#197 opened Aug 28, 2023 by saraahwallace

ValueError: Invalid contig name 'chr14_GL000194v1_random' for reference 'GRCh38'

#193 opened May 14, 2021 by leldershaw

ValueError: Unable to infer reference genome

#192 opened Dec 29, 2020 by Shuhui-d

Vaxrank '--output-neoepitope-report' fails on StopLoss variants

#189 opened Jun 8, 2020 by JPFinnigan

Add N-terminal methionine check to manufacturability

#188 opened Apr 15, 2020 by julia326

Use faster k-mer index for proteome instead of full FM index

#183 opened Feb 11, 2020 by iskandr

Rename "epitope" to "MHC ligand"

#181 opened Feb 11, 2020 by iskandr

Soften the requirements of vaxrank for isovar version

#179 opened Dec 12, 2019 by golubnikova

Errors when writing XLSX file

#178 opened Jun 13, 2019 by code12412f

Add low priority vaccine peptide filtering for C terminal residues that cause racemization

#174 opened Nov 27, 2018 by iskandr

Don't want to minimize GRAVY score

#171 opened Oct 8, 2018 by iskandr

Add class II predictions to report

#165 opened Jun 22, 2018 by julia326

Vaxrank with netmhcpan-iedb errors on IDH1 test data

#164 opened Jun 18, 2018 by julia326

Include gene name in Excel output

#156 opened Feb 7, 2018 by iskandr

Add option to exclude variants from JPT report

#155 opened Feb 7, 2018 by julia326

Add tissue expression to each variant

#154 opened Feb 6, 2018 by iskandr

Add gene summary to each variant

#153 opened Feb 6, 2018 by iskandr

Change vaccine peptide sort

#151 opened Jan 23, 2018 by julia326

Better clarify the terms used throughout the PDF report enhancement

#139 opened Jul 6, 2017 by armish

Provide feedback

Saved searches

Use saved searches to filter your results more quickly