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Releases: openproblems-bio/task_denoising

denoising v1.0.0

19 Dec 16:30
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BREAKING CHANGES

  • Update to viash 0.9.0 RC6

  • Directory structure has been updated.

  • Update to viash 0.9.0 (PR #13).

NEW FUNCTIONALITY

  • Add CHANGELOG.md (PR #7).

  • Update process_dataset component to subsample large datasets (PR #14).

  • Add the scPRINT method (PR #25)

MAJOR CHANGES

  • Revamp scripts directory (PR #13).

  • Relocated process_datasets to data_processors/process_datasets (PR #13).

MINOR CHANGES

  • Remove dtype parameter in .Anndata() (PR #6).

  • Fix target_sum deprecation warning in mse mmetric (PR #8).

  • Update task_name variable to denoising in component scripts (PR #9).

  • Update docker containers used in components (PR #12).

  • Set numpy<2 for some failing methods (PR #13).

  • Small changes to api file names (PR #13).

  • Update test_resources path in components (PR #18).

  • Update workflows to use core repository dependency (PR #20).

  • Update the common submodule (PR #24)

  • Use the common checkItemAllowed() for the method check in the benchmark workflow (PR #24)

  • Use the cxg_immune_cell_atlas dataset instead of the cxg_mouse_pancreas_atlas for testing (PR #24)

  • Update README (PR #24)

  • Add a base method API schema (PR #24)

  • Add dataset_organism to training input files (PR #24)

BUG FIXES

  • Update the nextflow workflow dependencies (PR #17).

  • Fix paths in scripts (PR #18).

  • Subsample datasets by batch if batch is defined (PR #22).