Merge pull request #208 from openproblems-bio/fix/integration-test

remove ns-list workflows
openproblems-bio · Jul 24, 2023 · c7c4ab7 · c7c4ab7
2 parents ae31ddb + ea00a93
commit c7c4ab7
Show file tree

Hide file tree

Showing 2 changed files with 7 additions and 9 deletions.
diff --git a/.github/workflows/integration-test.yml b/.github/workflows/integration-test.yml
@@ -44,19 +44,13 @@ jobs:
         publish_branch: integration_build
         exclude_assets: ''
 
-    - id: ns_list_components
+    - id: ns_list
       uses: viash-io/viash-actions/ns-list@v4
       with:
         platform: docker
         src: src
         format: json
 
-    - id: ns_list_workflows
-      uses: viash-io/viash-actions/ns-list@v4
-      with:
-        src: workflows
-        format: json
-
     - id: set_matrix
       run: |
         echo "components=$(jq -c '[ .[] | 
@@ -65,7 +59,7 @@ jobs:
             "config": .info.config,
             "dir": .info.config | capture("^(?<dir>.*\/)").dir
           }
-        ]' ${{ steps.ns_list_components.outputs.output_file }} )" >> $GITHUB_OUTPUT
+        ]' ${{ steps.ns_list.outputs.output_file }} )" >> $GITHUB_OUTPUT
 
         echo "workflows=$(jq -c '[ .[] | . as $config | (.functionality.test_resources // [])[] | select(.type == "nextflow_script", .entrypoint) |
           { 
@@ -74,7 +68,7 @@ jobs:
             "entry": .entrypoint,
             "config": $config.info.config
           }
-        ] | unique' ${{ steps.ns_list_workflows.outputs.output_file }} )" >> $GITHUB_OUTPUT
+        ] | unique' ${{ steps.ns_list.outputs.output_file }} )" >> $GITHUB_OUTPUT
 
   # phase 2
   build:

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -18,6 +18,10 @@
 
 * Update "baseline" to "control" (PR #146).
 
+### BUG FIXES
+
+* Remove the ns-list action for workflows in integration test (PR #208)
+
 ## common
 
 ### NEW FUNCTIONALITY