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Merge branch 'main' into fix/viash-test-bugs
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KaiWaldrant authored Jul 24, 2023
2 parents 6a1139b + c7c4ab7 commit bc76571
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12 changes: 3 additions & 9 deletions .github/workflows/integration-test.yml
Original file line number Diff line number Diff line change
Expand Up @@ -44,19 +44,13 @@ jobs:
publish_branch: integration_build
exclude_assets: ''

- id: ns_list_components
- id: ns_list
uses: viash-io/viash-actions/ns-list@v4
with:
platform: docker
src: src
format: json

- id: ns_list_workflows
uses: viash-io/viash-actions/ns-list@v4
with:
src: workflows
format: json

- id: set_matrix
run: |
echo "components=$(jq -c '[ .[] |
Expand All @@ -65,7 +59,7 @@ jobs:
"config": .info.config,
"dir": .info.config | capture("^(?<dir>.*\/)").dir
}
]' ${{ steps.ns_list_components.outputs.output_file }} )" >> $GITHUB_OUTPUT
]' ${{ steps.ns_list.outputs.output_file }} )" >> $GITHUB_OUTPUT
echo "workflows=$(jq -c '[ .[] | . as $config | (.functionality.test_resources // [])[] | select(.type == "nextflow_script", .entrypoint) |
{
Expand All @@ -74,7 +68,7 @@ jobs:
"entry": .entrypoint,
"config": $config.info.config
}
] | unique' ${{ steps.ns_list_workflows.outputs.output_file }} )" >> $GITHUB_OUTPUT
] | unique' ${{ steps.ns_list.outputs.output_file }} )" >> $GITHUB_OUTPUT
# phase 2
build:
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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -21,8 +21,12 @@
### BUG FIXES

* `dimensionality_reduction/methods/tsne`: Use GitHub version of MulticoreTSNE.

* `label_projection/methods/seurat_transferdata`: Temporarily disable component as it appears to not be working (PR #206).

* Remove the ns-list action for workflows in integration test (PR #208)


## common

### NEW FUNCTIONALITY
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