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[REVIEW]: heatwaveR: A central algorithm for the detection of heatwaves and cold-spells #821

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whedon opened this issue Jul 12, 2018 · 22 comments
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accepted published Papers published in JOSS recommend-accept Papers recommended for acceptance in JOSS. review

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@whedon
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whedon commented Jul 12, 2018

Submitting author: @robwschlegel (Robert Schlegel)
Repository: https://github.com/robwschlegel/heatwaveR
Version: 0.2.7
Editor: @leeper
Reviewer: @khaors
Archive: 10.5281/zenodo.1324309

Status

status

Status badge code:

HTML: <a href="http://joss.theoj.org/papers/9353247bebdfcc0f7357a759381416bb"><img src="http://joss.theoj.org/papers/9353247bebdfcc0f7357a759381416bb/status.svg"></a>
Markdown: [![status](http://joss.theoj.org/papers/9353247bebdfcc0f7357a759381416bb/status.svg)](http://joss.theoj.org/papers/9353247bebdfcc0f7357a759381416bb)

Reviewers and authors:

Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)

Reviewer instructions & questions

@khaors, please carry out your review in this issue by updating the checklist below. If you cannot edit the checklist please:

  1. Make sure you're logged in to your GitHub account
  2. Be sure to accept the invite at this URL: https://github.com/openjournals/joss-reviews/invitations

The reviewer guidelines are available here: https://joss.theoj.org/about#reviewer_guidelines. Any questions/concerns please let @leeper know.

Review checklist for @khaors

Conflict of interest

Code of Conduct

General checks

  • Repository: Is the source code for this software available at the repository url?
  • License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
  • Version: Does the release version given match the GitHub release (0.2.7)?
  • Authorship: Has the submitting author (@robwschlegel) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?

Functionality

  • Installation: Does installation proceed as outlined in the documentation?
  • Functionality: Have the functional claims of the software been confirmed?
  • Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
  • Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
  • Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
  • Automated tests: Are there automated tests or manual steps described so that the function of the software can be verified?
  • Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

  • Authors: Does the paper.md file include a list of authors with their affiliations?
  • A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
  • References: Do all archival references that should have a DOI list one (e.g., papers, datasets, software)?
@whedon
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whedon commented Jul 12, 2018

Hello human, I'm @whedon. I'm here to help you with some common editorial tasks. @khaors it looks like you're currently assigned as the reviewer for this paper 🎉.

⭐ Important ⭐

If you haven't already, you should seriously consider unsubscribing from GitHub notifications for this (https://github.com/openjournals/joss-reviews) repository. As a reviewer, you're probably currently watching this repository which means for GitHub's default behaviour you will receive notifications (emails) for all reviews 😿

To fix this do the following two things:

  1. Set yourself as 'Not watching' https://github.com/openjournals/joss-reviews:

watching

  1. You may also like to change your default settings for this watching repositories in your GitHub profile here: https://github.com/settings/notifications

notifications

For a list of things I can do to help you, just type:

@whedon commands

@whedon
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whedon commented Jul 12, 2018

Attempting PDF compilation. Reticulating splines etc...

@whedon
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whedon commented Jul 12, 2018

@leeper
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leeper commented Jul 12, 2018

@khaors The review checklist is available here. Let me know if you have questions.

@khaors
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khaors commented Jul 16, 2018

@leeper In the Installation Instructions, the list of dependencies should be clearly stated. Is this referring to the README file in addition to the DESCRIPTION file?

@leeper
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leeper commented Jul 16, 2018

@khaors DESCRIPTION file is fine, unless there are non-CRAN, non-R, or otherwise atypical dependencies.

@khaors
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khaors commented Jul 19, 2018

@leeper I have finished the review. Sorry for the delay. Checking the vignettes took a while but the results are ok. I opened an issue in the heatwaveR repository with the my comments ( you can check this under the tag JOSS review).

@leeper
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leeper commented Jul 19, 2018

@khaors Excellent. Thanks for your careful review!

@robwschlegel Please address the issues raised at: robwschlegel/heatwaveR#7 and let me know when you're ready for me to take another look.

@robwschlegel
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robwschlegel commented Jul 19, 2018 via email

@robwschlegel
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I've addressed the issues at robwschlegel/heatwaveR#7

@leeper
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leeper commented Jul 25, 2018

Great, thank you @robwschlegel. @khaors Can you take a look and see if there's anything else that should be addressed?

@khaors
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khaors commented Jul 31, 2018

@leeper I checked and the suggestions have been addressed and the heatwaveR package has been modified in accordance.

@leeper
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leeper commented Jul 31, 2018

Great. Thanks!

@leeper
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leeper commented Jul 31, 2018

@robwschlegel The review process is now complete. To finalize your submission and accept your paper in JOSS, we need you to deposit a copy of your software repository (including any revisions made during the JOSS review process) with a data-archiving service. To do so:

  1. Create a GitHub release of the current version of your software repository
  2. Deposit that release with Zenodo, figshare, or a similar DOI issuer.
  3. Post a comment here to @leeper with the DOI for the release.

Let me know if you have any questions about the process.

@robwschlegel
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@leeper
I've deposited the software in Zenodo:
10.5281/zenodo.1324309
All the best,
-Rob

@robwschlegel
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@leeper
Here is the web link if that helps:
https://zenodo.org/record/1324309#.W2B7DRgS08o

@leeper
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leeper commented Jul 31, 2018

@whedon set 10.5281/zenodo.1324309 as archive

@whedon
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whedon commented Jul 31, 2018

OK. 10.5281/zenodo.1324309 is the archive.

@leeper
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leeper commented Jul 31, 2018

@arfon over to you

@arfon arfon added the accepted label Jul 31, 2018
@arfon
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arfon commented Jul 31, 2018

@khaors - many thanks for your review here and to @leeper for editing this submission ✨

@robwschlegel - your paper is now accepted into JOSS and your DOI is https://doi.org/10.21105/joss.00821 ⚡ 🚀 💥

@arfon arfon closed this as completed Jul 31, 2018
@whedon
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whedon commented Jul 31, 2018

🎉🎉🎉 Congratulations on your paper acceptance! 🎉🎉🎉

If you would like to include a link to your paper from your README use the following code snippets:

Markdown:
[![DOI](http://joss.theoj.org/papers/10.21105/joss.00821/status.svg)](https://doi.org/10.21105/joss.00821)

HTML:
<a style="border-width:0" href="https://doi.org/10.21105/joss.00821">
  <img src="http://joss.theoj.org/papers/10.21105/joss.00821/status.svg" alt="DOI badge" >
</a>

This is how it will look in your documentation:

DOI

We need your help!

Journal of Open Source Software is a community-run journal and relies upon volunteer effort. If you'd like to support us please consider doing either one (or both) of the the following:

@robwschlegel
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Woohoo!

@whedon whedon added published Papers published in JOSS recommend-accept Papers recommended for acceptance in JOSS. labels Mar 2, 2020
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