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CZI pyramid not detected / tile width not correct #3710

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melissalinkert opened this issue Jun 17, 2021 · 1 comment · Fixed by #3928
Closed

CZI pyramid not detected / tile width not correct #3710

melissalinkert opened this issue Jun 17, 2021 · 1 comment · Fixed by #3928

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@melissalinkert
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See https://forum.image.sc/t/czi-slide-scanner-image-bio-formats/52892/ and data in inbox/romainGuiet. I can confirm that the two files reported as not working open with skewed images and multiple series which are individual tiles from a pyramid.
Currently open .czi PRs (#3681, #3687) do not fix this. In Zen, the files open as Z stacks with multiple channels (no scenes).

I suspect #3323 is related, but not identical. Fixing the pyramid detection first may fix the image skew as well.

@imagesc-bot
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This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/czi-slide-scanner-image-bio-formats/52892/5

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