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Add new partial pattern to help queries
If applied, this commit will fix #904.
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src/patterns/dosdp-dev/hasPartCharacteristicOfAnatomicalEntity.yaml
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pattern_name: hasPartCharacteristicOfAnatomicalEntity.yaml | ||
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pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/hasPartCharacteristicOfAnatomicalEntity.yaml | ||
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description: 'Use this partial phenotype pattern to group phenotypes by | ||
anatomical entity. For example, use this to group "head" related phenotypes.' | ||
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contributors: | ||
- https://orcid.org/0000-0001-8314-2140 # Ray Stefancsik | ||
- https://orcid.org/0000-0002-7356-1779 # Nicolas Matentzoglu | ||
- https://orcid.org/0000-0003-4606-0597 # Susan Bello | ||
- https://orcid.org/0000-0002-6490-7723 # Anna V. Anagnostopoulos | ||
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classes: | ||
anatomical_entity: UBERON:0001062 | ||
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relations: | ||
characteristic_of: RO:0000052 | ||
has_part: BFO:0000051 | ||
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annotationProperties: | ||
exact_synonym: oio:hasExactSynonym | ||
related_synonym: oio:hasRelatedSynonym | ||
xref: oio:hasDbXref | ||
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vars: | ||
anatomical_entity: "'anatomical_entity'" # "'variable_range'" | ||
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name: | ||
text: "trait ?? %s" | ||
vars: | ||
- anatomical_entity | ||
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annotations: | ||
- annotationProperty: exact_synonym | ||
text: "? of %s" | ||
vars: | ||
- anatomical_entity | ||
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- annotationProperty: related_synonym | ||
text: "? %s" | ||
vars: | ||
- anatomical_entity | ||
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- annotationProperty: xref | ||
text: "AUTO:patterns/patterns/chemical_role_attribute" | ||
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def: | ||
text: "A trait that ?? %s." | ||
vars: | ||
- anatomical_entity | ||
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subClassOf: | ||
text: "'has_part' some ('characteristic_of' some %s)" | ||
vars: | ||
- anatomical_entity | ||
... |