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Add 'abnormally arched anatomical entity' pattern template (#895)
* Add pattern template This commit intends to add a new 'Abnormally arched anatomical entity' phenotype pattern template draft for community review. If applied, this commit will fix #893. * Add line break , to fix the line that is too long. * Update contributors
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src/patterns/dosdp-dev/abnormallyArchedAnatomicalEntity.yaml
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pattern_name: abnormallyArchedAnatomicalEntity | ||
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pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyArchedAnatomicalEntity.yaml | ||
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description: 'Use this phenotype pattern when an anatomical entity shows an | ||
abnormal shape or structure with a curve forming or resembling an arch.' | ||
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# examples: | ||
# - http://purl.obolibrary.org/obo/MP_0003761 # arched palate | ||
# - http://purl.obolibrary.org/obo/ZP_0102340 # trunk arched, abnormal | ||
# - http://purl.obolibrary.org/obo/HP_0002553 # Highly arched eyebrow | ||
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contributors: | ||
- https://orcid.org/0000-0001-8314-2140 # Ray Stefancsik | ||
- https://orcid.org/0000-0003-4606-0597 # Susan Bello | ||
- https://orcid.org/0000-0002-7073-9172 # David Osumi-Sutherland | ||
- https://orcid.org/0000-0002-6490-7723 # Anna V. Anagnostopoulos | ||
- https://orcid.org/0000-0001-7941-2961 # Leigh Carmody | ||
- https://orcid.org/0000-0002-9900-7880 # Yvonne M. Bradford | ||
- https://orcid.org/0000-0002-1373-1705 # Clare Pilgrim | ||
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classes: | ||
arched: PATO:0001594 | ||
abnormal: PATO:0000460 | ||
anatomical_entity: UBERON:0001062 | ||
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relations: | ||
characteristic_of: RO:0000052 | ||
has_modifier: RO:0002573 | ||
has_part: BFO:0000051 | ||
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annotationProperties: | ||
exact_synonym: oio:hasExactSynonym | ||
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vars: | ||
anatomical_entity: "'anatomical_entity'" | ||
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name: | ||
text: "arched %s" | ||
vars: | ||
- anatomical_entity | ||
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annotations: | ||
- annotationProperty: exact_synonym | ||
text: "abnormally arched %s" | ||
vars: | ||
- anatomical_entity | ||
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def: | ||
text: "An abnormally concave %s which forms or resembles an arch." | ||
vars: | ||
- anatomical_entity | ||
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equivalentTo: | ||
text: "'has_part' some ( | ||
'arched' and | ||
('characteristic_of' some %s) and | ||
('has_modifier' some 'abnormal') | ||
)" | ||
vars: | ||
- anatomical_entity | ||
... |