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Add 'abnormally arched anatomical entity' pattern template (#895)
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* Add pattern template

This commit intends to add a new 'Abnormally arched anatomical entity' phenotype pattern template draft for community review.

If applied, this commit will fix #893.

* Add line break

, to fix the line that is too long.

* Update contributors
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rays22 authored Dec 1, 2022
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63 changes: 63 additions & 0 deletions src/patterns/dosdp-dev/abnormallyArchedAnatomicalEntity.yaml
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---
pattern_name: abnormallyArchedAnatomicalEntity

pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyArchedAnatomicalEntity.yaml

description: 'Use this phenotype pattern when an anatomical entity shows an
abnormal shape or structure with a curve forming or resembling an arch.'

# examples:
# - http://purl.obolibrary.org/obo/MP_0003761 # arched palate
# - http://purl.obolibrary.org/obo/ZP_0102340 # trunk arched, abnormal
# - http://purl.obolibrary.org/obo/HP_0002553 # Highly arched eyebrow

contributors:
- https://orcid.org/0000-0001-8314-2140 # Ray Stefancsik
- https://orcid.org/0000-0003-4606-0597 # Susan Bello
- https://orcid.org/0000-0002-7073-9172 # David Osumi-Sutherland
- https://orcid.org/0000-0002-6490-7723 # Anna V. Anagnostopoulos
- https://orcid.org/0000-0001-7941-2961 # Leigh Carmody
- https://orcid.org/0000-0002-9900-7880 # Yvonne M. Bradford
- https://orcid.org/0000-0002-1373-1705 # Clare Pilgrim

classes:
arched: PATO:0001594
abnormal: PATO:0000460
anatomical_entity: UBERON:0001062

relations:
characteristic_of: RO:0000052
has_modifier: RO:0002573
has_part: BFO:0000051

annotationProperties:
exact_synonym: oio:hasExactSynonym

vars:
anatomical_entity: "'anatomical_entity'"

name:
text: "arched %s"
vars:
- anatomical_entity

annotations:
- annotationProperty: exact_synonym
text: "abnormally arched %s"
vars:
- anatomical_entity

def:
text: "An abnormally concave %s which forms or resembles an arch."
vars:
- anatomical_entity

equivalentTo:
text: "'has_part' some (
'arched' and
('characteristic_of' some %s) and
('has_modifier' some 'abnormal')
)"
vars:
- anatomical_entity
...

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