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FIX: Disable pipeline level conda tests #1415

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merged 2 commits into from
Oct 16, 2024
Merged

FIX: Disable pipeline level conda tests #1415

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7524cf0
disable conda pipeline level tests + update CHANGELOG
maxulysse Oct 16, 2024
8c13b13
fix PR link
maxulysse Oct 16, 2024
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22 changes: 22 additions & 0 deletions .github/workflows/ci.yml
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Expand Up @@ -65,6 +65,28 @@ jobs:
profile: "conda"
- isMaster: false
profile: "singularity"
- profile: "conda"
nf_test_files: default.nf.test
- profile: "conda"
nf_test_files: featurecounts_group_type.nf.test
- profile: "conda"
nf_test_files: hisat2.nf.test
- profile: "conda"
nf_test_files: kallisto.nf.test
- profile: "conda"
nf_test_files: min_mapped_reads.nf.test
- profile: "conda"
nf_test_files: nextflow.config
- profile: "conda"
nf_test_files: remove_ribo_rna.nf.test
- profile: "conda"
nf_test_files: salmon.nf.test
- profile: "conda"
nf_test_files: skip_qc.nf.test
- profile: "conda"
nf_test_files: skip_trimming.nf.test
- profile: "conda"
nf_test_files: star_rsem.nf.test
steps:
- name: Check out pipeline code
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -18,8 +18,10 @@ Special thanks to the following for their contributions to the release:
- [PR #1401](https://github.com/nf-core/rnaseq/pull/1401) - Template update for nf-core/tools v3.0.1
- [PR #1405](https://github.com/nf-core/rnaseq/pull/1405) - Fix bad variable name in subworkflow
- [PR #1406](https://github.com/nf-core/rnaseq/pull/1406) - Keep only one samplesheetToList
- [PR #1409](https://github.com/nf-core/rnaseq/pull/1409) - Fix manifest DOI text
- [PR #1410](https://github.com/nf-core/rnaseq/pull/1410) - Fix issues caused by empty versions from trimming subworkflows
- [PR #1412](https://github.com/nf-core/rnaseq/pull/1412) - Reset versions back to 3.16.1 for patch release
- [PR #1415](https://github.com/nf-core/rnaseq/pull/1415) - Disable pipeline level conda tests

### Parameters

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