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FIX: Disable pipeline level conda tests #1415

Merged
merged 2 commits into from
Oct 16, 2024
Merged

FIX: Disable pipeline level conda tests #1415

merged 2 commits into from
Oct 16, 2024

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maxulysse
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@maxulysse maxulysse commented Oct 16, 2024 •
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Done to resolve CI errors like:

    > Caused by:
    >   java.nio.channels.OverlappingFileLockException

caused by un-named Conda envs? @maxulysse maybe you can just clarify here for our future selves?

liked meta issue: nf-core/modules#6664

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github-actions bot commented Oct 16, 2024 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 8c13b13

+| ✅ 185 tests passed       |+
#| ❔   9 tests were ignored |#
!| ❗   9 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yml
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • nextflow_config - Config manifest.version should end in dev: 3.16.1
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-10-16 11:38:03

@pinin4fjords pinin4fjords merged commit 4061de3 into nf-core:dev Oct 16, 2024
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maxulysse added a commit that referenced this pull request Oct 16, 2024
@maxulysse
Properly disable conda pipeline level tests
7bb5400 
fix #1415
@maxulysse maxulysse mentioned this pull request Oct 16, 2024
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@pinin4fjords pinin4fjords pinin4fjords approved these changes

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@maxulysse @pinin4fjords