Merge pull request #13 from CRC-FONDA/dev

Disabled publishing of version.yml in visualization processes
nf-core · Dec 20, 2024 · 7c9e49d · 7c9e49d
2 parents ee02655 + c534f93
commit 7c9e49d
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Showing 3 changed files with 8 additions and 142 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -78,27 +78,19 @@ process {
     withName: "FORCE_PYRAMID" {
         stageInMode = 'copy'
         publishDir  = [
-            [
-                path:    { "${params.outdir}/trend/pyramid/" },
-                saveAs:  { "${it.substring(12,it.indexOf("."))}/trend/${it.substring(0,11)}/$it" },
-                pattern: '*.tif*',
-                mode:    params.publish_dir_mode,
-                enabled: params.publish_dir_enabled
-            ],
-            [
-                path:    { "${params.outdir}/trend/pyramid/" },
-                pattern: 'versions.yml',
-                mode:    params.publish_dir_mode,
-                enabled: params.publish_dir_enabled
-            ]
+            path:    { "${params.outdir}/trend/pyramid/" },
+            saveAs:  { "${it.substring(12,it.indexOf("."))}/trend/${it.substring(0,11)}/$it" },
+            pattern: '*.tif*',
+            mode:    params.publish_dir_mode,
+            enabled: params.publish_dir_enabled
         ]
     }
 
     withName: "FORCE_MOSAIC" {
         publishDir = [
             path:    { "${params.outdir}/trend/mosaic/" },
             mode:    params.publish_dir_mode,
-            saveAs:  {"${params.outdir}/trend/mosaic/${task.tag}/${it.replaceAll("trend/","")}"},
+            saveAs:  { filename -> filename.equals('versions.yml') ? null : "${params.outdir}/trend/mosaic/${task.tag}/${filename.replaceAll("trend/","")}"},
             enabled: params.publish_dir_enabled
         ]
     }