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updated Dockerfile, matched main.nf so that it can work with it #44

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Mar 2, 2021
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please execute my tests CI
subwaystation committed Mar 1, 2021
commit d689e6ebd26ef8c2c3a02dfeb27ab25170eb77dc
16 changes: 8 additions & 8 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
@@ -71,14 +71,14 @@ jobs:
matrix:
# Nextflow versions: check pipeline minimum and current latest
nxf_ver: ['20.10.0', '']
edyeet_parameters:
- '--alignment_map_pct_id 70'
- '--edyeet_align_pct_id 70'
- '--alignment_n_secondary 2'
- '--alignment_segment_length 5000'
- '--alignment_merge_segments'
- '--alignment_no_splits'
- '--alingment_block_length 40000'
edyeet_parameters: [
'--alignment_map_pct_id 70'
, '--edyeet_align_pct_id 70'
, '--alignment_n_secondary 2'
, '--alignment_segment_length 5000'
, '--alignment_merge_segments'
, '--alignment_no_splits'
, '--alingment_block_length 40000']
wfmash_parameters:
- '--wfmash --alignment_map_pct_id 70'
- '--wfmash --alignment_n_secondary 2'