-
Notifications
You must be signed in to change notification settings - Fork 736
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Update genomescope2 module and add nf-tests #5399
Merged
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
mahesh-panchal
requested review from
LeuThrAsp and
rodtheo
and removed request for
a team
March 26, 2024 16:55
Co-authored-by: rodtheo <[email protected]>
Co-authored-by: rodtheo <[email protected]>
mahesh-panchal
force-pushed
the
nftest_genomescope2
branch
from
March 26, 2024 16:56
b787b99
to
75e0eaa
Compare
17 tasks
CarsonJM
approved these changes
Mar 26, 2024
jvfe
added a commit
that referenced
this pull request
Mar 26, 2024
* master: (47 commits) Update genomescope2 module and add nf-tests (#5399) PLINK/GWAS additional output (#5387) Plink linkage disequilibrium additional output (#5388) new module: Plink epistasis analysis (#5386) Add module for TaxonKit name2taxid (#4778) Update-cellranger-modules (#5016) Update: GTDBTK/CLASSIFYWF (migrate to nf-test and only execute mv when dirs actually present) (#5390) Added MetaPlAn subworkflow (#5356) port `vcftools` to nf-test (#5375) Update modules: rgi (#5383) Update condaforge/mambaforge Docker tag to v24 (#5381) Update gecco + migrate to nf-test (#5372) Update learnmsa module to work with compressed files. (#5276) New module: kraken2/build (#5212) Update kalign module to work with compressed files. (#5277) port `ensemblvep/download` to nf-test (#5373) port `manta-germline` to nf-test (#5362) port `tiddit-sv` to nf-test and add `--threads` (#5371) Decoupler module (#5317) fix optional cram support in modules and migrate to nf-test (#5329) ...
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
PR checklist
--fitted_hist
Closes #XXX
versions.yml
file.label
nf-core modules test <MODULE> --profile docker
nf-core modules test <MODULE> --profile singularity
nf-core modules test <MODULE> --profile conda
nf-core subworkflows test <SUBWORKFLOW> --profile docker
nf-core subworkflows test <SUBWORKFLOW> --profile singularity
nf-core subworkflows test <SUBWORKFLOW> --profile conda