Skip to content
nf-core CI

fix: align versioning across tests and config #171

Sign in to view logs

fix: align versioning across tests and config

fix: align versioning across tests and config #171

Triggered via pull request October 31, 2024 15:43
@znorgaardznorgaard
opened #87
zn_fix_versioning
Status Cancelled
Total duration 5m 4s
Artifacts –

ci.yml

on: pull_request
Choose nextflow versions to test against depending on target branch
0s
Choose nextflow versions to test against depending on target branch
Matrix: test
Fit to window
Zoom out
Zoom in

Annotations

41 errors and 8 warnings
Run pipeline with test data (latest-everything | test | conda)
Process completed with exit code 1.
Run pipeline with test data (24.04.2 | test | conda)
Process completed with exit code 1.
Run pipeline with test data (24.04.2 | test | conda)
Process completed with exit code 1.
Run pipeline with test data (latest-everything | test | conda)
Process completed with exit code 1.
Run pipeline with test data (latest-everything | test | conda)
Process completed with exit code 1.
Run pipeline with test data (24.04.2 | test | conda)
Process completed with exit code 1.
Run pipeline with test data (24.04.2 | test | conda)
Process completed with exit code 1.
Run pipeline with test data (latest-everything | test | conda)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything | test | conda)
The operation was canceled.
Run pipeline with test data (24.04.2 | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (24.04.2 | test | docker)
The operation was canceled.
Run pipeline with test data (latest-everything | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything | test | singularity)
The operation was canceled.
Run pipeline with test data (latest-everything | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything | test | singularity)
The operation was canceled.
Run pipeline with test data (latest-everything | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything | test | docker)
The operation was canceled.
Run pipeline with test data (latest-everything | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything | test | docker)
The operation was canceled.
Run pipeline with test data (latest-everything | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything | test | singularity)
The operation was canceled.
Run pipeline with test data (24.04.2 | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (24.04.2 | test | docker)
The operation was canceled.
Run pipeline with test data (latest-everything | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything | test | docker)
The operation was canceled.
Run pipeline with test data (24.04.2 | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (24.04.2 | test | singularity)
The operation was canceled.
Run pipeline with test data (latest-everything | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything | test | singularity)
The operation was canceled.
Run pipeline with test data (latest-everything | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything | test | docker)
The operation was canceled.
Run pipeline with test data (24.04.2 | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (24.04.2 | test | docker)
The operation was canceled.
Run pipeline with test data (24.04.2 | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (24.04.2 | test | singularity)
The operation was canceled.
Run pipeline with test data (24.04.2 | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (24.04.2 | test | singularity)
The operation was canceled.
Run pipeline with test data (24.04.2 | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (24.04.2 | test | docker)
The operation was canceled.
Run pipeline with test data (24.04.2 | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (24.04.2 | test | singularity)
The operation was canceled.
Run pipeline with test data (latest-everything | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.04.2 | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.04.2 | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.04.2 | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.04.2 | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(