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Post-release version bump #59

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merged 8 commits into from
Jul 5, 2023
Merged

Post-release version bump #59

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21cac1c
Publish CRAM test data
BrunoGrandePhD Dec 20, 2021
303f6cd
Merge pull request #37 from Sage-Bionetworks-Workflows/bgrande/publis…
FriederikeHanssen Jan 5, 2022
b1fc825
Merge pull request #40 from qbic-pipelines/dev
FriederikeHanssen Jan 13, 2022
ceae4d6
Merge pull request #50 from nf-core/dev
SusiJo May 31, 2023
da5fe62
Update Zenodo ID
FriederikeHanssen May 31, 2023
6a21277
Update Zenodo ID
FriederikeHanssen May 31, 2023
80ad7db
Update Zenodo ID
FriederikeHanssen May 31, 2023
20a8e16
after release is before the release
SusiJo May 31, 2023
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16 changes: 16 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -3,6 +3,22 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v2.1.0dev

### `Added`

### `Changed`

### `Fixed`

### `Dependencies`

| Dependency | Old version | New version |
| ---------- | ----------- | ----------- |
| | | |

### `Deprecated`

## v2.0.0 - Annie Easley

Initial release of nf-core/bamtofastq, created with the [nf-core](https://nf-co.re/) template.
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4 changes: 2 additions & 2 deletions README.md
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@@ -1,6 +1,6 @@
# ![nf-core/bamtofastq](docs/images/nf-core-bamtofastq_logo_light.png#gh-light-mode-only) ![nf-core/bamtofastq](docs/images/nf-core-bamtofastq_logo_dark.png#gh-dark-mode-only)

[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/bamtofastq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.4022138-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.4022138)
[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/bamtofastq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.4710628-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.4710628)

[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A522.10.1-23aa62.svg)](https://www.nextflow.io/)
[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
Expand Down Expand Up @@ -101,7 +101,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `#

## Citations

If you use nf-core/bamtofastq for your analysis, please cite it using the following doi: [10.5281/zenodo.284730479](https://doi.org/10.5281/zenodo.284730479)
If you use nf-core/bamtofastq for your analysis, please cite it using the following doi: [10.5281/zenodo.4710628](https://doi.org/10.5281/zenodo.4710628)

An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.

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2 changes: 1 addition & 1 deletion lib/WorkflowMain.groovy
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Expand Up @@ -12,7 +12,7 @@ class WorkflowMain {
public static String citation(workflow) {
return "If you use ${workflow.manifest.name} for your analysis please cite:\n\n" +
"* The pipeline\n" +
" https://doi.org/10.5281/zenodo.284730479" +
" https://doi.org/10.5281/zenodo.4710628" +
"* The nf-core framework\n" +
" https://doi.org/10.1038/s41587-020-0439-x\n\n" +
"* Software dependencies\n" +
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4 changes: 2 additions & 2 deletions nextflow.config
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Expand Up @@ -232,8 +232,8 @@ manifest {
description = """Workflow converts one or multiple bam/cram files to fastq format"""
mainScript = 'main.nf'
nextflowVersion = '!>=22.10.1'
version = '2.0.0'
doi = ''
version = '2.1.0dev'
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@FriederikeHanssen FriederikeHanssen Jul 5, 2023 •
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well this alignment is abyssmal :D But can be fixed later

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afaik this is due to the bump-version, this is always not aligned, I gave up there as well :D

doi = 'https://doi.org/10.5281/zenodo.4710628'
}

// Load modules.config for DSL2 module specific options
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