Merge pull request #59 from SusiJo/dev

Post-release version bump
nf-core · Jul 5, 2023 · 7571ca5 · 7571ca5
2 parents 33bd917 + 20a8e16
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,22 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v2.1.0dev
+
+### `Added`
+
+### `Changed`
+
+### `Fixed`
+
+### `Dependencies`
+
+| Dependency | Old version | New version |
+| ---------- | ----------- | ----------- |
+|            |             |             |
+
+### `Deprecated`
+
 ## v2.0.0 - Annie Easley
 
 Initial release of nf-core/bamtofastq, created with the [nf-core](https://nf-co.re/) template.

diff --git a/README.md b/README.md
@@ -1,6 +1,6 @@
 # ![nf-core/bamtofastq](docs/images/nf-core-bamtofastq_logo_light.png#gh-light-mode-only) ![nf-core/bamtofastq](docs/images/nf-core-bamtofastq_logo_dark.png#gh-dark-mode-only)
 
-[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/bamtofastq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.4022138-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.4022138)
+[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/bamtofastq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.4710628-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.4710628)
 
 [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A522.10.1-23aa62.svg)](https://www.nextflow.io/)
 [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
@@ -101,7 +101,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `#
 
 ## Citations
 
-If you use nf-core/bamtofastq for your analysis, please cite it using the following doi: [10.5281/zenodo.284730479](https://doi.org/10.5281/zenodo.284730479)
+If you use nf-core/bamtofastq for your analysis, please cite it using the following doi: [10.5281/zenodo.4710628](https://doi.org/10.5281/zenodo.4710628)
 
 An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.
 

diff --git a/lib/WorkflowMain.groovy b/lib/WorkflowMain.groovy
@@ -12,7 +12,7 @@ class WorkflowMain {
     public static String citation(workflow) {
         return "If you use ${workflow.manifest.name} for your analysis please cite:\n\n" +
             "* The pipeline\n" +
-            "  https://doi.org/10.5281/zenodo.284730479" +
+            "  https://doi.org/10.5281/zenodo.4710628" +
             "* The nf-core framework\n" +
             "  https://doi.org/10.1038/s41587-020-0439-x\n\n" +
             "* Software dependencies\n" +

diff --git a/nextflow.config b/nextflow.config
@@ -232,8 +232,8 @@ manifest {
     description     = """Workflow converts one or multiple bam/cram files to fastq format"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=22.10.1'
-    version         = '2.0.0'
-    doi             = ''
+    version = '2.1.0dev'
+    doi             = 'https://doi.org/10.5281/zenodo.4710628'
 }
 
 // Load modules.config for DSL2 module specific options