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Fix SH files for unite9 #800

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merged 3 commits into from
Nov 21, 2024
Merged

Fix SH files for unite9 #800

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ebb8b0a
Add paths to corrected SH-files for UNITE 9.0
jtangrot Nov 18, 2024
1f9f8d9
Update changelog
jtangrot Nov 19, 2024
1e95a10
Update changelog
jtangrot Nov 19, 2024
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -11,6 +11,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Fixed`

- [#800](https://github.com/nf-core/ampliseq/pull/800) - Fixed SH files for UNITE9.0, they were missing some entries due to a bug caused by API update in PlutoF

### `Dependencies`

### `Removed`
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8 changes: 4 additions & 4 deletions conf/ref_databases.config
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Expand Up @@ -204,15 +204,15 @@ params {
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE general FASTA release for Fungi. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938067"
fmtscript = "taxref_reformat_unite.sh"
dbversion = "UNITE-fungi v9.0 (https://doi.org/10.15156/BIO/2938067)"
shfile = [ "https://figshare.scilifelab.se/ndownloader/files/40788767", "https://figshare.scilifelab.se/ndownloader/files/40788770"]
shfile = [ "https://figshare.scilifelab.se/ndownloader/files/50055762", "https://figshare.scilifelab.se/ndownloader/files/50055765"]
}
'unite-fungi=9.0' {
title = "UNITE general FASTA release for Fungi - Version 9.0"
file = [ "https://s3.hpc.ut.ee/plutof-public/original/fa1038da-d18d-46b7-88a9-c21bcf38c43d.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE general FASTA release for Fungi. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938067"
fmtscript = "taxref_reformat_unite.sh"
dbversion = "UNITE-fungi v9.0 (https://doi.org/10.15156/BIO/2938067)"
shfile = [ "https://figshare.scilifelab.se/ndownloader/files/40788767", "https://figshare.scilifelab.se/ndownloader/files/40788770"]
shfile = [ "https://figshare.scilifelab.se/ndownloader/files/50055762", "https://figshare.scilifelab.se/ndownloader/files/50055765"]
}
'unite-fungi=8.3' {
title = "UNITE general FASTA release for Fungi - Version 8.3"
Expand All @@ -236,15 +236,15 @@ params {
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE general FASTA release for eukaryotes. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938069"
fmtscript = "taxref_reformat_unite.sh"
dbversion = "UNITE-alleuk v9.0 (https://doi.org/10.15156/BIO/2938069)"
shfile = [ "https://figshare.scilifelab.se/ndownloader/files/40788773", "https://figshare.scilifelab.se/ndownloader/files/40788776"]
shfile = [ "https://figshare.scilifelab.se/ndownloader/files/50055768", "https://figshare.scilifelab.se/ndownloader/files/50055771"]
}
'unite-alleuk=9.0' {
title = "UNITE general FASTA release for eukaryotes - Version 9.0"
file = [ "https://s3.hpc.ut.ee/plutof-public/original/e318f5fd-1ef4-40fd-9e77-1b94d91b3858.tgz" ]
citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE general FASTA release for eukaryotes. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938069"
fmtscript = "taxref_reformat_unite.sh"
dbversion = "UNITE-alleuk v9.0 (https://doi.org/10.15156/BIO/2938069)"
shfile = [ "https://figshare.scilifelab.se/ndownloader/files/40788773", "https://figshare.scilifelab.se/ndownloader/files/40788776"]
shfile = [ "https://figshare.scilifelab.se/ndownloader/files/50055768", "https://figshare.scilifelab.se/ndownloader/files/50055771"]
}
'unite-alleuk=8.3' {
title = "UNITE general FASTA release for eukaryotes - Version 8.3"
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