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Remove old report workflow #189

Merged
merged 1 commit into from
Oct 18, 2024
Merged

Remove old report workflow #189

merged 1 commit into from
Oct 18, 2024

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huddlej
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@huddlej huddlej commented Oct 18, 2024

Description of proposed changes

Removes an old workflow that generates clade frequency plots from Nextclade annotations, since we now do this with the flu_frequencies workflow [1]. Since this workflow used the old Nextclade v2 interface, removing it in this commit also helps with Nextclade v3 migration across all of our pathogen workflows.

[1] https://github.com/nextstrain/flu_frequencies

Related issue(s)

Closes #187

Checklist

  • Checks pass

Removes an old workflow that generates clade frequency plots from
Nextclade annotations, since we now do this with the flu_frequencies
workflow [1]. Since this workflow used the old Nextclade v2 interface,
removing it in this commit also helps with Nextclade v3 migration across
all of our pathogen workflows.

Closes #187

[1] https://github.com/nextstrain/flu_frequencies
@huddlej huddlej merged commit 0632fdc into master Oct 18, 2024
3 checks passed
@huddlej huddlej deleted the remove-old-report-workflow branch October 18, 2024 23:22
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report.smk: Migrate to Nextclade v3
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