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Fix links to files in measles repo [#14]
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genehack committed Aug 5, 2024
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6 changes: 3 additions & 3 deletions src/learn/augur-to-auspice.rst
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Expand Up @@ -403,7 +403,7 @@ to see the available options here.
The most comprehensive description of this file is via
`its schema <https://nextstrain.org/schemas/auspice/config/v2>`__, however to
introduce this file here's a snippet of the `Auspice config JSON for the
measles dataset presented above <https://github.com/nextstrain/measles/blob/main/config/auspice_config.json>`__:
measles dataset presented above <https://github.com/nextstrain/measles/blob/main/phylogenetic/defaults/auspice_config.json>`__:

.. code-block:: json
Expand Down Expand Up @@ -535,7 +535,7 @@ A colors TSV file may be provided to ``augur export v2`` which is the
most common way to associate (discrete) values with actual colors. Such
a file has 3 tab-separated columns: the coloring key, the metadata
value, and the color hex; no headers are necessary. As an example, `here
are (some of) the colors TSV <https://github.com/nextstrain/measles/blob/main/config/colors.tsv>`__
are (some of) the colors TSV <https://github.com/nextstrain/measles/blob/main/phylogenetic/defaults/colors.tsv>`__
used in the measles build:

.. code-block:: text
Expand Down Expand Up @@ -757,7 +757,7 @@ The **maintainers** (array of dictionaries) is used in the Auspice
header to identify who created or maintains the dataset.

As an example, here's how the `measles auspice-config uses these
keys <https://github.com/nextstrain/measles/blob/main/config/auspice_config.json>`__
keys <https://github.com/nextstrain/measles/blob/main/phylogenetic/defaults/auspice_config.json>`__
and you can `see here <https://nextstrain.org/measles>`__ how Auspice
renders these:

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