fix(setup,linting): fix issues related to changes in setup and pylint

[jdhughes-usgs]

No description provided.

[codecov]

Codecov Report

Merging #115 (089234e) into master (c370efa) will decrease coverage by 16.409%.
The diff coverage is 50.000%.

❗ Current head 089234e differs from pull request most recent head c305829. Consider uploading reports for the commit c305829 to get more accurate results

@@              Coverage Diff               @@
##            master      #115        +/-   ##
==============================================
- Coverage   62.313%   45.903%   -16.410%     
==============================================
  Files           18        18                
  Lines         4495      4492         -3     
==============================================
- Hits          2801      2062       -739     
- Misses        1694      2430       +736     

Impacted Files	Coverage Δ
pymake/utils/download.py	31.714% <33.333%> (-37.539%)	⬇️
pymake/autotest/autotest.py	2.482% <100.000%> (-24.713%)	⬇️
pymake/plot/dependency_graphs.py	11.688% <0.000%> (-57.143%)	⬇️
pymake/utils/usgsprograms.py	37.073% <0.000%> (-46.830%)	⬇️
pymake/utils/_Popen_wrapper.py	60.000% <0.000%> (-30.000%)	⬇️
pymake/pymake_base.py	73.745% <0.000%> (-12.999%)	⬇️
pymake/utils/_compiler_switches.py	71.397% <0.000%> (-9.171%)	⬇️
pymake/pymake.py	72.222% <0.000%> (-3.704%)	⬇️
... and 1 more