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Citing Contiguity

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mjsull edited this page Sep 15, 2015 · 8 revisions

If you have used Contiguity in your study please cite:

Sullivan MJ, Ben Zakour NL, Forde BM, Stanton-Cook M, Beatson SA. (2015)
Contiguity: Contig adjacency graph construction and visualisation.
PeerJ PrePrints 3:e1273 https://dx.doi.org/10.7287/peerj.preprints.1037v1

If you have used Contiguity to create an adjacency graph you should also cite

  • Khmer
  • NCBI-BLAST+
  • Bowtie 2
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  1. Introduction to Contiguity
  2. Requirements
  3. Installation
  4. Citing Contiguity
  5. Workflow and Examples
  6. Finishing a PacBio HGAP assembly
  7. Ordering contigs
  8. Finding passenger genes
  9. Identifying plasmid contigs
  10. Menu overview
  11. File
  12. View
  13. Tools
  14. Viewing the Assembly
  15. Canvas overview
  16. Context menus
  17. Creating comparisons
  18. Comparison to a reference
  19. Self comparison
  20. Finding paths
  21. Creating scaffolds
  22. Creating scaffolds from a CAG
  23. Creating scaffolds from a PacBio Assembly
  24. Constructing a Contig adjacency graph
  25. CAG creation GUI
  26. CAG creation command-line
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