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Added a failing test for PyQT plotting (passes <0.1.7, fails at later versions). #805
Added a failing test for PyQT plotting (passes <0.1.7, fails at later versions). #805
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As a separate additon I've put the Travis.Yaml file we use for PycQED that allows testing pyqtgraph plotting in the online builds (so that we can get rid of the language: python
notifications:
email: true
cache: pip
python:
- "3.6"
env:
- TRAVISCI=true PYTHON=3.6
before_install:
- if [ ${TRAVIS_PYTHON_VERSION:0:1} == "2" ]; then wget http://repo.continuum.io/miniconda/Miniconda-3.5.5-Linux-x86_64.sh -O miniconda.sh; else wget http://repo.continuum.io/miniconda/Miniconda3-3.5.5-Linux-x86_64.sh -O miniconda.sh; fi
- chmod +x miniconda.sh
- ./miniconda.sh -b -p /home/travis/mc
- export PATH=/home/travis/mc/bin:$PATH
# command to install dependencies
install:
- export GIT_FULL_HASH=`git rev-parse HEAD`
- conda update conda --yes
- conda create -n test_env python=${PYTHON} --yes
- source activate test_env
- conda install numpy scipy pyopengl pytest flake8 six coverage matplotlib --yes
- conda install -c bioconda pygraphviz --yes
- conda install cython --yes
- conda install pyqt --yes;
- pip install --upgrade pip
- pip install -r requirements.txt
- pip install git+git://github.com/DiCarloLab-Delft/Qcodes.git
- pip install coverage pytest-cov pytest --upgrade
- pip install codacy-coverage
- echo ${QT}
- echo ${TEST}
- echo ${PYTHON}
- pip install -e .
before_script: # configure a headless display to test plot generation
- "export DISPLAY=:99.0"
- "sh -e /etc/init.d/xvfb start"
- sleep 3 # give xvfb some time to start
# command to run tests
script:
- py.test pycqed/tests --cov=pycqed --cov-report xml --cov-config=.coveragerc
after_success:
- pip install codacy-coverage
- python-codacy-coverage -r coverage.xml
|
@AdriaanRol Thanks I just pushed a fix to get the tests passing locally. Thanks for the Travis script. It's been on my list but I haven't gotten around to do it yet. I will add that as a new PR |
Author: Adriaan <[email protected]> Added a failing test for PyQT plotting (passes <0.1.7, fails at later versions). (#805)
@jenshnielsen , I haven't run your updated code but I'm wondering do the correct units get displayed now (as they are clearly not None). |
Author: Adriaan <[email protected]> Added a failing test for PyQT plotting (passes <0.1.7, fails at later versions). (#805)
The scaling code will do nothing as as the trace data structure is completely different from the one defined by the loop but it will not crash |
@jenshnielsen , I guess I'll have to check it out then. It would be to bad though as this is something that previously worked fine (at least for us) and would then be broken upon updating. |
I don't think it's broken but the new functionality will just do exactly nothing for you as it cant find the units and labels of your plot it can't update them |
@jenshnielsen I guess then my question is, will it find it if I give it as arguments to the plot function as it is in the example test I made? (I would assume it does). |
4745: Update pyjwt requirement from ~=2.5.0 to ~=2.6.0 r=jenshnielsen a=dependabot[bot] Updates the requirements on [pyjwt](https://github.com/jpadilla/pyjwt) to permit the latest version. <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/jpadilla/pyjwt/blob/master/CHANGELOG.rst">pyjwt's changelog</a>.</em></p> <blockquote> <h2><code>v2.6.0 <https://github.com/jpadilla/pyjwt/compare/2.5.0...2.6.0></code>__</h2> <p>Changed</p> <pre><code> - bump up cryptography >= 3.4.0 by `@jpadilla` in `[#807](jpadilla/pyjwt#807) <https://github.com/jpadilla/pyjwt/pull/807>`_ - Remove `types-cryptography` from `crypto` extra by `@lautat` in `[#805](jpadilla/pyjwt#805) <https://github.com/jpadilla/pyjwt/pull/805>`_ <p>Fixed</p> <pre><code> - Invalidate token on the exact second the token expires `[#797](jpadilla/pyjwt#797) &lt;https://github.com/jpadilla/pyjwt/pull/797&gt;`_ - fix: version 2.5.0 heading typo by `@c0state` in `[#803](jpadilla/pyjwt#803) &lt;https://github.com/jpadilla/pyjwt/pull/803&gt;`_ Added </code></pre> <ul> <li>Adding validation for <code>issued_at</code> when <code>iat &gt; (now + leeway)</code> as <code>ImmatureSignatureError</code> by <a href="https://github.com/sriharan16"><code>`@sriharan16</code></a>` in <a href="https://github-redirect.dependabot.com/jpadilla/pyjwt/pull/794">jpadilla/pyjwt#794</a></li> </ul> <h2><code>v2.5.0 &lt;https://github.com/jpadilla/pyjwt/compare/2.4.0...2.5.0&gt;</code>__</h2> <p>Changed </code></pre></p> <ul> <li>Skip keys with incompatible alg when loading JWKSet by <a href="https://github.com/DaGuich"><code>`@DaGuich</code></a>` in <code>[#762](jpadilla/pyjwt#762) <https://github.com/jpadilla/pyjwt/pull/762></code>__</li> <li>Remove support for python3.6 by <a href="https://github.com/sirosen"><code>`@sirosen</code></a>` in <code>[#777](jpadilla/pyjwt#777) <https://github.com/jpadilla/pyjwt/pull/777></code>__</li> <li>Emit a deprecation warning for unsupported kwargs by <a href="https://github.com/sirosen"><code>`@sirosen</code></a>` in <code>[#776](jpadilla/pyjwt#776) <https://github.com/jpadilla/pyjwt/pull/776></code>__</li> <li>Remove redundant wheel dep from pyproject.toml by <a href="https://github.com/mgorny"><code>`@mgorny</code></a>` in <code>[#765](jpadilla/pyjwt#765) <https://github.com/jpadilla/pyjwt/pull/765></code>__</li> <li>Do not fail when an unusable key occurs by <a href="https://github.com/DaGuich"><code>`@DaGuich</code></a>` in <code>[#762](jpadilla/pyjwt#762) <https://github.com/jpadilla/pyjwt/pull/762></code>__</li> <li>Update audience typing by <a href="https://github.com/JulianMaurin"><code>`@JulianMaurin</code></a>` in <code>[#782](jpadilla/pyjwt#782) <https://github.com/jpadilla/pyjwt/pull/782></code>__</li> <li>Improve PyJWKSet error accuracy by <a href="https://github.com/JulianMaurin"><code>`@JulianMaurin</code></a>` in <code>[#786](jpadilla/pyjwt#786) <https://github.com/jpadilla/pyjwt/pull/786></code>__</li> <li>Mypy as pre-commit check + api_jws typing by <a href="https://github.com/JulianMaurin"><code>`@JulianMaurin</code></a>` in <code>[#787](jpadilla/pyjwt#787) <https://github.com/jpadilla/pyjwt/pull/787></code>__</li> </ul> <p>Fixed</p> <pre><code> - Adjust expected exceptions in option merging tests for PyPy3 by `@mgorny` in `[#763](jpadilla/pyjwt#763) <https://github.com/jpadilla/pyjwt/pull/763>`__ - Fixes for pyright on strict mode by `@brandon-leapyear` in `[#747](jpadilla/pyjwt#747) <https://github.com/jpadilla/pyjwt/pull/747>`__ - docs: fix simple typo, iinstance -> isinstance by `@timgates42` in `[#774](jpadilla/pyjwt#774) <https://github.com/jpadilla/pyjwt/pull/774>`__ - Fix typo: priot -> prior by `@jdufresne` in `[#780](jpadilla/pyjwt#780) <https://github.com/jpadilla/pyjwt/pull/780>`__ - Fix for headers disorder issue by `@kadabusha` in `[#721](jpadilla/pyjwt#721) <https://github.com/jpadilla/pyjwt/pull/721>`__ <p>Added </code></pre></p> <ul> <li>Add to_jwk static method to ECAlgorithm by <a href="https://github.com/leonsmith"><code>`@leonsmith</code></a>` in <code>[#732](jpadilla/pyjwt#732) <https://github.com/jpadilla/pyjwt/pull/732></code>__</li> <li>Expose get_algorithm_by_name as new method by <a href="https://github.com/sirosen"><code>`@sirosen</code></a>` in <code>[#773](jpadilla/pyjwt#773) <https://github.com/jpadilla/pyjwt/pull/773></code>__</li> <li>Add type hints to jwt/help.py and add missing types dependency by <a href="https://github.com/kkirsche"><code>`@kkirsche</code></a>` in <code>[#784](jpadilla/pyjwt#784) <https://github.com/jpadilla/pyjwt/pull/784></code>__</li> <li>Add cacheing functionality for JWK set by <a href="https://github.com/wuhaoyujerry"><code>`@wuhaoyujerry</code></a>` in <code>[#781](jpadilla/pyjwt#781) <https://github.com/jpadilla/pyjwt/pull/781></code>__</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li>See full diff in <a href="https://github.com/jpadilla/pyjwt/commits">compare view</a></li> </ul> </details> <br /> You can trigger a rebase of this PR by commenting ``@dependabot` rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - ``@dependabot` rebase` will rebase this PR - ``@dependabot` recreate` will recreate this PR, overwriting any edits that have been made to it - ``@dependabot` merge` will merge this PR after your CI passes on it - ``@dependabot` squash and merge` will squash and merge this PR after your CI passes on it - ``@dependabot` cancel merge` will cancel a previously requested merge and block automerging - ``@dependabot` reopen` will reopen this PR if it is closed - ``@dependabot` close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - ``@dependabot` ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - ``@dependabot` ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - ``@dependabot` ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> 4746: Update pandas requirement from ~=1.5.0 to ~=1.5.1 r=jenshnielsen a=dependabot[bot] Updates the requirements on [pandas](https://github.com/pandas-dev/pandas) to permit the latest version. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/pandas-dev/pandas/releases">pandas's releases</a>.</em></p> <blockquote> <h2>Pandas 1.5.1</h2> <p>This is a patch release in the 1.5.x series and includes some regression and bug fixes. We recommend that all users upgrade to this version.</p> <p>See the <a href="https://pandas.pydata.org/pandas-docs/version/1.5.1/whatsnew/v1.5.1.html">full whatsnew</a> for a list of all the changes.</p> <p>The release will be available on the defaults and conda-forge channels:</p> <pre><code>conda install pandas </code></pre> <p>Or via PyPI:</p> <pre><code>python3 -m pip install --upgrade pandas </code></pre> <p>Please report any issues with the release on the <a href="https://github.com/pandas-dev/pandas/issues">pandas issue tracker</a>.</p> <p>Thanks to all the contributors who made this release possible.</p> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/pandas-dev/pandas/commit/91111fd99898d9dcaa6bf6bedb662db4108da6e6"><code>91111fd</code></a> RLS: 1.5.1</li> <li><a href="https://github.com/pandas-dev/pandas/commit/72863856504a4e906fc603f9e4624f251b614828"><code>7286385</code></a> Backport PR <a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/49162">#49162</a> on branch 1.5.x (PERF: Fix performance regression for isin...</li> <li><a href="https://github.com/pandas-dev/pandas/commit/8429c50a279ba953514d1ca4d4a2bcef5e23ecc9"><code>8429c50</code></a> Backport PR <a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/49140">#49140</a> on branch 1.5.x (Revert "PERF: faster corrwith method for ...</li> <li><a href="https://github.com/pandas-dev/pandas/commit/5b036c1c35890c44531f796f5dca92796276b2b5"><code>5b036c1</code></a> Backport PR <a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/49137">#49137</a> on branch 1.5.x (WEB/DOC: Fix typo in OVH name) (<a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/49138">#49138</a>)</li> <li><a href="https://github.com/pandas-dev/pandas/commit/ea971acb948d16e284a38292cd615a5eb7c055ab"><code>ea971ac</code></a> Backport PR <a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/48770">#48770</a> on branch 1.5.x (added sytle in stylesheet for <blockquote...</li> <li><a href="https://github.com/pandas-dev/pandas/commit/27717a20061aaedda0d3e5de8461835e952c49f3"><code>27717a2</code></a> Backport PR <a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/49080">#49080</a> on branch 1.5.x (REGR: midx.values resetting freq of under...</li> <li><a href="https://github.com/pandas-dev/pandas/commit/c58f2057b8c8a7fa79654c45a83c963c013a3aa3"><code>c58f205</code></a> Backport PR <a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/48457">#48457</a> on branch 1.5.x (TST: Fix unsigned pyarrow types in SIGNED...</li> <li><a href="https://github.com/pandas-dev/pandas/commit/072402b58cbd87c2106413a37213c0b6020e34b1"><code>072402b</code></a> Backport PR <a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/49053">#49053</a> on branch 1.5.x (REVERT caching in find_stack_level) (<a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/49079">#49079</a>)</li> <li><a href="https://github.com/pandas-dev/pandas/commit/f9eebaf9de23aa9c5debdd86524615b22c23025f"><code>f9eebaf</code></a> Backport PR <a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/49072">#49072</a> on branch 1.5.x (BUG: redirect from meeting to community w...</li> <li><a href="https://github.com/pandas-dev/pandas/commit/b8d2f461767e1e2124a08c17be69bf0f847c882e"><code>b8d2f46</code></a> Backport PR <a href="https://github-redirect.dependabot.com/pandas-dev/pandas/issues/49070">#49070</a> on branch 1.5.x (CI: Fix DeprecationWarning of numpy dev) ...</li> <li>Additional commits viewable in <a href="https://github.com/pandas-dev/pandas/compare/v1.5.0...v1.5.1">compare view</a></li> </ul> </details> <br /> You can trigger a rebase of this PR by commenting ``@dependabot` rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - ``@dependabot` rebase` will rebase this PR - ``@dependabot` recreate` will recreate this PR, overwriting any edits that have been made to it - ``@dependabot` merge` will merge this PR after your CI passes on it - ``@dependabot` squash and merge` will squash and merge this PR after your CI passes on it - ``@dependabot` cancel merge` will cancel a previously requested merge and block automerging - ``@dependabot` reopen` will reopen this PR if it is closed - ``@dependabot` close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - ``@dependabot` ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - ``@dependabot` ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - ``@dependabot` ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> 4748: Bump scipy from 1.9.2 to 1.9.3 r=jenshnielsen a=dependabot[bot] Bumps [scipy](https://github.com/scipy/scipy) from 1.9.2 to 1.9.3. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/scipy/scipy/releases">scipy's releases</a>.</em></p> <blockquote> <h1>SciPy 1.9.3 Release Notes</h1> <p>SciPy <code>1.9.3</code> is a bug-fix release with no new features compared to <code>1.9.2</code>.</p> <h1>Authors</h1> <ul> <li>Jelle Aalbers (1)</li> <li>Peter Bell (1)</li> <li>Jake Bowhay (3)</li> <li>Matthew Brett (3)</li> <li>Evgeni Burovski (5)</li> <li>drpeteb (1) +</li> <li>Sebastian Ehlert (1) +</li> <li>GavinZhang (1) +</li> <li>Ralf Gommers (2)</li> <li>Matt Haberland (15)</li> <li>Lakshaya Inani (1) +</li> <li>Joseph T. Iosue (1)</li> <li>Nathan Jacobi (1) +</li> <li>jmkuebler (1) +</li> <li>Nikita Karetnikov (1) +</li> <li>Lechnio (1) +</li> <li>Nicholas McKibben (1)</li> <li>Andrew Nelson (1)</li> <li>o-alexandre-felipe (1) +</li> <li>Tirth Patel (1)</li> <li>Tyler Reddy (51)</li> <li>Martin Reinecke (1)</li> <li>Marie Roald (1) +</li> <li>Pamphile Roy (2)</li> <li>Eli Schwartz (1)</li> <li>serge-sans-paille (1)</li> <li>ehsan shirvanian (1) +</li> <li>Mamoru TASAKA (1) +</li> <li>Samuel Wallan (1)</li> <li>Warren Weckesser (7)</li> <li>Gavin Zhang (1) +</li> </ul> <p>A total of 31 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete.</p> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/scipy/scipy/commit/de80faf9d3480b9dbb9b888568b64499e0e70c19"><code>de80faf</code></a> REL: set 1.9.3 released [wheel build]</li> <li><a href="https://github.com/scipy/scipy/commit/25e6b901077646cbdaf0a022ff63d55b2c40b114"><code>25e6b90</code></a> Merge pull request <a href="https://github-redirect.dependabot.com/scipy/scipy/issues/17239">#17239</a> from tylerjereddy/treddy_backport_193</li> <li><a href="https://github.com/scipy/scipy/commit/ba33e438f948d5e147755aff0e63f6a01f5bc676"><code>ba33e43</code></a> DOC: update 1.9.3 relnotes</li> <li><a href="https://github.com/scipy/scipy/commit/92d892efaf689c1be970370cd9b33678482fb1fd"><code>92d892e</code></a> MAINT: Handle numpy's deprecation of accepting out-of-bound integers.</li> <li><a href="https://github.com/scipy/scipy/commit/ba5f6daa1d855f43f9f0d19f51386285b2835ce8"><code>ba5f6da</code></a> MAINT: PR 17239 revisions</li> <li><a href="https://github.com/scipy/scipy/commit/381089e753b42c26faf3fb689fc82f7a5c34c422"><code>381089e</code></a> DOC: update 1.9.3 relnotes</li> <li><a href="https://github.com/scipy/scipy/commit/2db3440cfd768009847fb355f3da53fc8c562ea3"><code>2db3440</code></a> BLD: fix invalid shebang for build helper script</li> <li><a href="https://github.com/scipy/scipy/commit/a9a6582a38e23f178ddaed874d1bc65de3313cb2"><code>a9a6582</code></a> DOC: stats.mode: add versionadded tag and correct order of keepdims descripti...</li> <li><a href="https://github.com/scipy/scipy/commit/f4738889bd34d294cfcbd4aaed8c914fe961a0fd"><code>f473888</code></a> BLD: fix issue with incomplete threads dependency handling (<a href="https://github-redirect.dependabot.com/scipy/scipy/issues/17200">#17200</a>)</li> <li><a href="https://github.com/scipy/scipy/commit/5370f15752eef1f62773236704d6339fa4d4e99c"><code>5370f15</code></a> MAINT: update meson.build to make it work on IBM i system (<a href="https://github-redirect.dependabot.com/scipy/scipy/issues/17193">#17193</a>)</li> <li>Additional commits viewable in <a href="https://github.com/scipy/scipy/compare/v1.9.2...v1.9.3">compare view</a></li> </ul> </details> <br /> [![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=scipy&package-manager=pip&previous-version=1.9.2&new-version=1.9.3)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) You can trigger a rebase of this PR by commenting ``@dependabot` rebase`. 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Includes a self contained test for #769.
Includes all the changes from #770.
@jenshnielsen I did not know how to make this PR clean into your branch as there are many forks.
Very important note, I have tested that this test passes on the 0.1.7 version of QCoDeS but not on the more recent update.