Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

templated schema-as-yaml modifier #247

Draft
wants to merge 5 commits into
base: main
Choose a base branch
from
Draft

templated schema-as-yaml modifier #247

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
4c2570f
prototype templated schema-as-yaml modifier
turbomam Oct 30, 2024
43ce356
remove titles from aliases
turbomam Oct 30, 2024
b1658fe
set tag to value
turbomam Oct 30, 2024
5c4b5dc
needs any_of handling
turbomam Oct 30, 2024
8f7169e
more rows in config
turbomam Oct 30, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
47 changes: 47 additions & 0 deletions qy2-config.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,47 @@
active scope criterion_field criterion_in_set criterion_value element_key operation target_field target_value
true slot_or_usage range TimestampValue set range string
true slot_or_usage range TextValue set range string
true slot_or_usage range QuantityValue set range string
true slot_or_usage range OntologyClass set range string
true slot_or_usage range GeolocationValue set range string
true slot_or_usage range ControlledTermValue set range string
true slot_or_usage range ControlledIdentifiedTermValue set range string
true slot_or_usage range enum_keys delete_field multivalued NULL
true slot_or_usage range type_keys delete_field multivalued NULL
true slot_or_usage dna_dnase set range YesNoEnum
true slot_or_usage dnase_rna set range YesNoEnum
true slot_or_usage oxy_stat_samp set range rel_to_oxygen_enum
true slot_or_usage oxy_stat_samp delete_field multivalued ""
true slot_or_usage sample_link set range string
true slot_or_usage delete_element latitude NULL
true slot_or_usage delete_element longitude NULL
true slot_or_usage delete_element has_maximum_numeric_value NULL
true slot_or_usage delete_element has_minimum_numeric_value NULL
true slot_or_usage delete_element has_numeric_value NULL
true slot_or_usage delete_element has_raw_value NULL
true slot_or_usage delete_element has_unit NULL
true slot_or_usage delete_element term NULL
true class delete_element AttributeValue NULL
true class delete_element ControlledIdentifiedTermValue NULL
true class delete_element ControlledTermValue NULL
true class delete_element GeolocationValue NULL
true class delete_element OntologyClass NULL
true class delete_element QuantityValue NULL
true class delete_element TextValue NULL
true class delete_element TimestampValue NULL
true all_elements delete_field domain_of NULL
true all_elements delete_field from_schema NULL
true all_elements delete_field domain NULL
true all_elements delete_field name ""
true all_elements delete_field owner NULL
true all_elements delete_field from_schema NULL
true all_elements delete_field from_schema NULL
true all_elements delete_field from_schema NULL
true class delete_element NamedThing NULL
true slot_or_usage delete_element name NULL
true slot_or_usage range string delete_field inlined NULL
true slot_or_usage range string delete_field inlined_as_list NULL
true all_elements "" "" delete_field text NULL
true slot_or_usage "" "" lat_lon set pattern ^[-+]?([1-8]?\d(\.\d{1,8})?|90(\.0{1,8})?)\s[-+]?(180(\.0{1,8})?|((1[0-7]\d)|([1-9]?\d))(\.\d{1,8})?)$
true slot_or_usage range QuantityValue pattern ^([-+]?[0-9]*\.?[0-9]+ +\S.*\|)*([-+]?[0-9]*\.?[0-9]+ +\S.*)$
true slot_or_usage string_serialization {text};{float} {unit} pattern ^[^;\t\r\x0A\|]+;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^;\t\r\x0A\|]+$
Loading
Loading