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150 depth should not be required for host associated #174

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bmeluch
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@bmeluch bmeluch commented Jan 23, 2024

From #150.

Previously, depth was required for all interfaces in which it is included, some of which don't make sense! depth is now only required for sediment, soil, and water; it is now recommended in all the other interfaces that were listed.

Proposed new depth requirement levels in submission schema:

  • AirInterface (recommended)
  • BiofilmInterface (recommended)
  • BuiltEnvInterface (recommended)
  • HcrCoresInterface (recommended)
  • HcrFluidsSwabsInterface (recommended)
  • HostAssociatedInterface (recommended)
  • MiscEnvsInterface (recommended)
  • PlantAssociatedInterface (recommended)
  • SedimentInterface (required)
  • SoilInterface (required)
  • WastewaterSludgeInterface (recommended)
  • WaterInterface (required)

depth inclusion in MIxS for reference:

  • Agriculture (recommended)
  • FoodFarmEnvironment (required)
  • HostAssociated (recommended)
  • MicrobialMatBiofilm (recommended)
  • MiscellaneousNaturalOrArtificialEnvironment (recommended)
  • PlantAssociated (recommended)
  • Sediment (required)
  • Soil (required)
  • SymbiontAssociated (recommended)
  • WastewaterSludge (recommended)
  • Water (required)

@bmeluch bmeluch linked an issue Jan 23, 2024 that may be closed by this pull request
4 tasks
@pkalita-lbl pkalita-lbl merged commit bb98420 into main Jan 25, 2024
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@pkalita-lbl pkalita-lbl deleted the 150-depth-should-not-be-required-for-host-associated branch January 25, 2024 00:39
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depth should not be required for host-associated
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