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Merge pull request #262 from microbiomedata/261-replace-marks-judgeme…
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…nt-with-overrides-from-voting-and-gold-inferences

re-emphasize voting and GOLD mappings
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@turbomam
turbomam authored Nov 11, 2024
2 parents b2a7a5c + 7c80eb3 commit f156044
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Showing 13 changed files with 6,263 additions and 6,554 deletions.
6 changes: 4 additions & 2 deletions notebooks/environmental_context_value_sets/environmental_context_value_sets.Makefile
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clean:
rm -rf sediment/env_medium/post_google_sheets_sediment_env_medium.tsv

rm -rf soil/gold/gold-soils.tsv
rm -rf soil/gold/wide_gold_soils.tsv
rm -rf soil/gold/gold-soils-by-semsql.tsv
rm -rf soil/gold/gold-soils-by-semsql-wide.tsv
rm -rf soil/gold/gold-soils-by-sparql.tsv
rm -rf soil/discover_excludable_soils.tsv
rm -rf soil/env_broad_scale/post_google_sheets_soil_env_broad_scale.tsv
Expand All @@ -11,3 +11,5 @@ clean:
rm -rf soil/env_medium/post_google_sheets_soil_env_medium.tsv

rm -rf water/env_broad_scale/post_google_sheets_water_env_broad_scale.tsv


38 changes: 0 additions & 38 deletions ...nmental_context_value_sets/sediment/env_medium/post_google_sheets_sediment_env_medium.tsv
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106 changes: 53 additions & 53 deletions notebooks/environmental_context_value_sets/soil/discover_excludable_soils.ipynb
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52 changes: 26 additions & 26 deletions ...tal_context_value_sets/soil/env_broad_scale/post_google_sheets_soil_env_broad_scale.ipynb
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Expand All @@ -21,8 +21,8 @@
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Expand All @@ -34,8 +34,8 @@
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Expand All @@ -47,8 +47,8 @@
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Expand All @@ -60,8 +60,8 @@
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Expand All @@ -73,8 +73,8 @@
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Expand All @@ -86,8 +86,8 @@
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Expand All @@ -99,8 +99,8 @@
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Expand Down Expand Up @@ -130,8 +130,8 @@
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Expand Down Expand Up @@ -161,8 +161,8 @@
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Expand All @@ -183,8 +183,8 @@
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Expand All @@ -196,8 +196,8 @@
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Expand All @@ -209,8 +209,8 @@
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84 changes: 42 additions & 42 deletions ...ental_context_value_sets/soil/env_broad_scale/post_google_sheets_soil_env_broad_scale.tsv
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id label
ENVO:01000220 tropical woodland biome
ENVO:01000216 montane shrubland biome
ENVO:01000191 subtropical grassland biome
ENVO:01000200 tropical broadleaf forest biome
ENVO:01000211 temperate coniferous forest biome
ENVO:01000192 tropical grassland biome
ENVO:01000227 tropical dry broadleaf forest biome
ENVO:01000180 tundra biome
ENVO:01000201 subtropical broadleaf forest biome
ENVO:01000198 mixed forest biome
ENVO:01000189 temperate savanna biome
ENVO:01000250 subpolar coniferous forest biome
ENVO:01000225 subtropical dry broadleaf forest biome
ENVO:01000217 mediterranean shrubland biome
ENVO:01000174 forest biome
ENVO:01000202 temperate broadleaf forest biome
ENVO:01000188 tropical savanna biome
ENVO:01000215 temperate shrubland biome
ENVO:01000199 mediterranean forest biome
ENVO:01000227 tropical dry broadleaf forest biome
ENVO:01000245 cropland biome
ENVO:01000211 temperate coniferous forest biome
ENVO:01000193 temperate grassland biome
ENVO:01001798 tropical mixed forest biome
ENVO:01000196 coniferous forest biome
ENVO:01000209 subtropical coniferous forest biome
ENVO:01000208 mediterranean woodland biome
ENVO:01000212 temperate mixed forest biome
ENVO:01000225 subtropical dry broadleaf forest biome
ENVO:01000218 xeric shrubland biome
ENVO:00000446 terrestrial biome
ENVO:01000195 flooded grassland biome
ENVO:01000222 subtropical woodland biome
ENVO:01000187 subtropical savanna biome
ENVO:01000177 grassland biome
ENVO:01000220 tropical woodland biome
ENVO:01000178 savanna biome
ENVO:01000223 montane savanna biome
ENVO:01001505 alpine tundra biome
ENVO:01001369 tidal mangrove shrubland
ENVO:01000175 woodland biome
ENVO:01000213 subtropical shrubland biome
ENVO:01000180 tundra biome
ENVO:01000178 savanna biome
ENVO:01000214 tropical shrubland biome
ENVO:01000224 mediterranean grassland biome
ENVO:01000226 subtropical moist broadleaf forest biome
ENVO:01000219 anthropogenic terrestrial biome
ENVO:01000229 mediterranean savanna biome
ENVO:01000190 flooded savanna biome
ENVO:01000228 tropical moist broadleaf forest biome
ENVO:01000192 tropical grassland biome
ENVO:01000247 rangeland biome
ENVO:01000226 subtropical moist broadleaf forest biome
ENVO:01001369 tidal mangrove shrubland
ENVO:01000210 tropical coniferous forest biome
ENVO:01000176 shrubland biome
ENVO:01000222 subtropical woodland biome
ENVO:01000193 temperate grassland biome
ENVO:01000224 mediterranean grassland biome
ENVO:01000181 mangrove biome
ENVO:01000201 subtropical broadleaf forest biome
ENVO:01000194 montane grassland biome
ENVO:01000221 temperate woodland biome
ENVO:01000177 grassland biome
ENVO:01000197 broadleaf forest biome
ENVO:01000190 flooded savanna biome
ENVO:00000446 terrestrial biome
ENVO:01000199 mediterranean forest biome
ENVO:01000209 subtropical coniferous forest biome
ENVO:01000250 subpolar coniferous forest biome
ENVO:01000189 temperate savanna biome
ENVO:01000195 flooded grassland biome
ENVO:01000191 subtropical grassland biome
ENVO:01000229 mediterranean savanna biome
ENVO:01000212 temperate mixed forest biome
ENVO:01001798 tropical mixed forest biome
ENVO:01000245 cropland biome
ENVO:01000176 shrubland biome
ENVO:01000216 montane shrubland biome
ENVO:01000196 coniferous forest biome
ENVO:01001505 alpine tundra biome
ENVO:01000208 mediterranean woodland biome
ENVO:01000174 forest biome
ENVO:01000219 anthropogenic terrestrial biome
ENVO:01000202 temperate broadleaf forest biome
ENVO:01000221 temperate woodland biome
ENVO:01000200 tropical broadleaf forest biome
ENVO:01000215 temperate shrubland biome
ENVO:01000188 tropical savanna biome
ENVO:01000228 tropical moist broadleaf forest biome
ENVO:01000213 subtropical shrubland biome
ENVO:01000194 montane grassland biome
ENVO:01000214 tropical shrubland biome
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