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Update README.md
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turbomam authored Nov 11, 2024
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Expand Up @@ -15,9 +15,11 @@ those context fields, but the guidance is only specific to what classes would re
address what subsets of classes could go in the fields on an Extension-byExtension basis. For example, it would not make
sense to say the ten env_broad_scale of a soil samples was 'ocean biome [ENVO:01000048]'.

We assume that some exploration may have already been done with other tools, followed by human review may have been
performed, but these notebooks do not yet consult voting sheets. They do not inject the value sets into LinkML YAML
files as enumerations either.
We assume that some exploration may have already been done with other tools, followed by human review,
but these notebooks do not yet consult voting sheets,
such as those created in the external-metadata-awareness repo, like [soil-env_medium.Makefile](https://github.com/microbiomedata/external-metadata-awareness/blob/main/Makefiles/soil-env_medium.Makefile),
which have been [shared as Google Sheets](https://docs.google.com/spreadsheets/d/1qYrUvWK6toajWpadaEJ66X05MjiZ7YAB/edit?gid=502854718#gid=502854718) at times.
They do not [inject the value sets into LinkML YAML files as enumerations](https://github.com/microbiomedata/submission-schema/pull/260) either.

## Generating the env_broad_scale value set for soil samples:

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