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Run inject-gold-pathway-terms in venv
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pkalita-lbl committed Jan 19, 2024
1 parent e445c84 commit a6dd2cb
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion project.Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -208,7 +208,7 @@ local/nmdc.yaml
- $(RUN) linkml-lint $@ > local/with_modifications.lint_report.txt

src/nmdc_submission_schema/schema/nmdc_submission_schema.yaml: local/with_modifications.yaml project/thirdparty/GoldEcosystemTree.json
inject-gold-pathway-terms -g $(word 2,$^) -i $< -o $@
$(RUN) inject-gold-pathway-terms -g $(word 2,$^) -i $< -o $@
# remove the multivalued true annotation from these gloabl slot definitions for the sake of linkml-convert
# esp to tsv? and dumping to SQLite?
# follow the .string_serialization=="{text};{float} {unit}" and .multivalued == true pattern?
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