gold soil sparql and graphs list

microbiomedata · Nov 4, 2024 · 164c4ba · 164c4ba
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Showing 3 changed files with 35 additions and 36 deletions.
diff --git a/notebooks/gold-soils-by-sparql.rq b/notebooks/gold-soils-by-sparql.rq
@@ -0,0 +1,35 @@
+# #  http://35.173.42.85/repository goldterms-with-support
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+PREFIX : <http://purl.obolibrary.org/obo/gold.owl#>
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
+PREFIX owl: <http://www.w3.org/2002/07/owl#>
+PREFIX oboInOwl: <http://www.geneontology.org/formats/oboInOwl#>
+PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
+select  ?s ?p ?o ?olab
+#?p (count(?s) as ?count) 
+where {
+    ?s rdfs:subClassOf* <https://w3id.org/gold.path/4212> ;
+                      ?p ?o .
+    optional {
+        ?o rdfs:label ?olab
+    }
+    minus {
+        ?s rdfs:subClassOf ?o 
+    }
+    minus {
+        ?s rdf:type ?o
+    }
+    minus {
+        ?s owl:equivalentClass ?o
+    }
+    minus {
+        ?s oboInOwl:hasExactSynonym ?o
+    }
+    minus {
+        ?s skos:closeMatch ?o
+    }
+    minus {
+        ?s skos:exactMatch ?o
+    }
+}
+#group by ?p
diff --git a/notebooks/goldterms-with-support-graphs.png b/notebooks/goldterms-with-support-graphs.png
diff --git a/notebooks/notebooks.Makefile b/notebooks/notebooks.Makefile
@@ -13,39 +13,3 @@ notebooks/gold-soils.tsv: local/goldterms.db local/envo.db
 	s.predicate not in ('rdf:type', 'rdfs:subClassOf', 'oio:hasExactSynonym', 'owl:equivalentClass' ) \
 	and \
 	ee.object = 'GOLDTERMS:4212'" > $@
-
-#  http://35.173.42.85/repository goldterms-with-support
-#PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
- #PREFIX : <http://purl.obolibrary.org/obo/gold.owl#>
- #PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
- #PREFIX owl: <http://www.w3.org/2002/07/owl#>
- #PREFIX oboInOwl: <http://www.geneontology.org/formats/oboInOwl#>
- #PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
- #select  ?s ?p ?o ?olab
- ##?p (count(?s) as ?count)
- #where {
- #    ?s rdfs:subClassOf* <https://w3id.org/gold.path/4212> ;
- #                      ?p ?o .
- #    optional {
- #        ?o rdfs:label ?olab
- #    }
- #    minus {
- #        ?s rdfs:subClassOf ?o
- #    }
- #    minus {
- #        ?s rdf:type ?o
- #    }
- #    minus {
- #        ?s owl:equivalentClass ?o
- #    }
- #    minus {
- #        ?s oboInOwl:hasExactSynonym ?o
- #    }
- #    minus {
- #        ?s skos:closeMatch ?o
- #    }
- #    minus {
- #        ?s skos:exactMatch ?o
- #    }
- #}
- ##group by ?p