Add R notebook exploring natural organic matter data#69

Merged

bmeluch merged 65 commits intomainfrom 34-create-r-notebook-to-explore-processed-data-for-a-second-omics-data-type

Sep 20, 2024

+6,057-5

Commits on Jul 4, 2024

nom notebook api queries - data back to biosample
bmeluch
committed

Commits on Jul 17, 2024

Commits on Jul 18, 2024

removal of duplicated nom url from analysis. averaging the two overlap percentages for single value per nom comparison, visualized in heatmap
samobermiller
committed

Commits on Jul 23, 2024

added sample type labelling
bmeluch
committed

Commits on Jul 24, 2024

added code for heatmap and made up some sample sources as placeholders for goldids etc. removed processed noms from analysis that had same url
samobermiller
committed

Commits on Jul 29, 2024

schema traversal, retrieve processed data
bmeluch
committed

Commits on Jul 30, 2024

added qc plots
bmeluch
committed

Commits on Jul 31, 2024

Commits on Aug 15, 2024

Commits on Aug 16, 2024

latest heatmap with quality control filtering
samobermiller
committed

Commits on Aug 22, 2024

added geographic info to plot
bmeluch
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Commits on Aug 27, 2024

added shared van krevelen with density
bmeluch
committed

Commits on Aug 29, 2024

van krevlen plots, expanded comments and notebook blurbs
samobermiller
committed

Commits on Sep 3, 2024

adding narration
bmeluch
committed

Commits on Sep 5, 2024

rendering of jupyter notebook and putting everything into python subfolder
samobermiller
committed

Commits on Sep 7, 2024

axes labels and post bea comparison
samobermiller
committed

Commits on Sep 10, 2024

Commits on Sep 12, 2024

fix renv dependencies i hope
bmeluch
committed

Commits on Sep 13, 2024

Commits on Sep 18, 2024

Commits on Sep 20, 2024