Merge pull request #21 from microbiomedata/bioscales-python

Add bioscales python notebook
microbiomedata · Nov 29, 2023 · 0dca3d3 · 0dca3d3
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diff --git a/bioscales_/README.md b/bioscales_/README.md
diff --git a/bioscales_/python/bioscales.ipynb b/bioscales_/python/bioscales.ipynb
diff --git a/bioscales_/R/bioscales_metadata.Rmd → ...hemical_metadata/R/bioscales_metadata.Rmd b/bioscales_/R/bioscales_metadata.Rmd → ...hemical_metadata/R/bioscales_metadata.Rmd
diff --git a/bioscales_/R/bioscales_metadata.ipynb → ...mical_metadata/R/bioscales_metadata.ipynb b/bioscales_/R/bioscales_metadata.ipynb → ...mical_metadata/R/bioscales_metadata.ipynb
diff --git a/bioscales_/R/bioscales_metadata.md → ...chemical_metadata/R/bioscales_metadata.md b/bioscales_/R/bioscales_metadata.md → ...chemical_metadata/R/bioscales_metadata.md
diff --git a/...ta_files/figure-gfm/unnamed-chunk-6-1.png → ...ta_files/figure-gfm/unnamed-chunk-6-1.png b/...ta_files/figure-gfm/unnamed-chunk-6-1.png → ...ta_files/figure-gfm/unnamed-chunk-6-1.png
diff --git a/bioscales_biogeochemical_metadata/README.md b/bioscales_biogeochemical_metadata/README.md
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+# Exploring the Bio-Scales metadata 
+
+This folder includes two notebooks, in R and Python, that explore the chemical metadata associated with the [Bio-Scales microbiome project](https://data.microbiomedata.org/details/study/nmdc:sty-11-r2h77870)  using the [NMDC-runtime API](https://api.microbiomedata.org/docs#/metadata/list_from_collection_nmdcschema__collection_name__get).  In particular, these notebooks find the study id for this project and associated biosamples, pull associated metadata and explore the chemical metadata.
+
+## R
+- [Static rendered R markdown notebook](https://github.com/microbiomedata/notebook_hackathons/blob/main/bioscales_biogeochemical_metadata/R/bioscales_metadata.md). _Viewing only, not editable_
+- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/notebook_hackathons/blob/main/bioscales_biogeochemical_metadata/R/bioscales_metadata.ipynb). This is the recommended way to interact with the notebook.  _You need a google account to use this option_
+
+## Python
+- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/notebook_hackathons/blob/bioscales-python/bioscales_biogeochemical_metadata/python/bioscales.ipynb). _Viewing only, not editable_
+- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/notebook_hackathons/blob/main/bioscales_biogeochemical_metadata/bioscales.ipynb).This is the recommended way to interact with the notebook. _You need a google account to use this option_