Merge pull request #54 from microbiomedata/52-readme_link_fix

Updates links in all readmes to point to new repo location

NEON_soil_metadata/README.md

@@ -3,9 +3,9 @@
 This folder includes two notebooks, in R and Python, that explore various ways of analyzing and visualizing the metadata the NEON soil metagenomes study using the [NMDC-runtime API](https://api.microbiomedata.org/docs#). More documentation on the NMDC-runtime API can be found [here](https://github.com/microbiomedata/NMDC_documentation/blob/main/docs/howto_guides/api_gui.md).
 
 ## R
-- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/notebook_hackathons/blob/main/NEON_soil_metadata/R/NEON_data_exploration.ipynb). _Viewing only, not editable_
-- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/notebook_hackathons/blob/main/NEON_soil_metadata/R/NEON_data_exploration.ipynb). This is the recommended way to interact with the notebook.  _You need a google account to use this option_
+- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/nmdc_notebooks/blob/main/NEON_soil_metadata/R/NEON_data_exploration.ipynb). _Viewing only, not editable_
+- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/nmdc_notebooks/blob/main/NEON_soil_metadata/R/NEON_data_exploration.ipynb). This is the recommended way to interact with the notebook.  _You need a google account to use this option_
 
 ## Python
-- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/notebook_hackathons/blob/main/NEON_soil_metadata/python/neon_soil_metadata_visual_exploration.ipynb). _Viewing only, not editable_
-- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/notebook_hackathons/blob/main/NEON_soil_metadata/python/neon_soil_metadata_visual_exploration.ipynb).This is the recommended way to interact with the notebook. _You need a google account to use this option_
+- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/nmdc_notebooks/blob/main/NEON_soil_metadata/python/neon_soil_metadata_visual_exploration.ipynb). _Viewing only, not editable_
+- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/nmdc_notebooks/blob/main/NEON_soil_metadata/python/neon_soil_metadata_visual_exploration.ipynb).This is the recommended way to interact with the notebook. _You need a google account to use this option_

README.md

@@ -3,9 +3,9 @@
 ## Quick Start
 Notebooks that are ready for use and exploration.
 
-- [NEON Soil MetaData](https://github.com/microbiomedata/notebook_hackathons/tree/main/NEON_soil_metadata)
-- [Bio-Scales Biogeochemical MetaData](https://github.com/microbiomedata/notebook_hackathons/tree/main/bioscales_biogeochemical_metadata)
-- [NEON Soil Microbial Community Composition](https://github.com/microbiomedata/notebook_hackathons/tree/main/taxonomic_dist_by_soil_layer)
+- [NEON Soil MetaData](https://github.com/microbiomedata/nmdc_notebooks/tree/main/NEON_soil_metadata)
+- [Bio-Scales Biogeochemical MetaData](https://github.com/microbiomedata/nmdc_notebooks/tree/main/bioscales_biogeochemical_metadata)
+- [NEON Soil Microbial Community Composition](https://github.com/microbiomedata/nmdc_notebooks/tree/main/taxonomic_dist_by_soil_layer)
 
 
 ## Overview 

bioscales_biogeochemical_metadata/README.md

@@ -5,9 +5,9 @@ This folder includes two notebooks, in R and Python, that explore the chemical m
 More documentation on the NMDC-runtime API can be found [here](https://github.com/microbiomedata/NMDC_documentation/blob/main/docs/howto_guides/api_gui.md).
 
 ## R
-- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/notebook_hackathons/blob/main/bioscales_biogeochemical_metadata/R/bioscales_metadata.ipynb). _Viewing only, not editable_
-- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/notebook_hackathons/blob/main/bioscales_biogeochemical_metadata/R/bioscales_metadata.ipynb). This is the recommended way to interact with the notebook.  _You need a google account to use this option_
+- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/nmdc_notebooks/blob/main/bioscales_biogeochemical_metadata/R/bioscales_metadata.ipynb). _Viewing only, not editable_
+- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/nmdc_notebooks/blob/main/bioscales_biogeochemical_metadata/R/bioscales_metadata.ipynb). This is the recommended way to interact with the notebook.  _You need a google account to use this option_
 
 ## Python
-- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/notebook_hackathons/blob/main/bioscales_biogeochemical_metadata/python/bioscales.ipynb). _Viewing only, not editable_
-- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/notebook_hackathons/blob/main/bioscales_biogeochemical_metadata/python/bioscales.ipynb).This is the recommended way to interact with the notebook. _You need a google account to use this option_
+- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/nmdc_notebooks/blob/main/bioscales_biogeochemical_metadata/python/bioscales.ipynb). _Viewing only, not editable_
+- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/nmdc_notebooks/blob/main/bioscales_biogeochemical_metadata/python/bioscales.ipynb).This is the recommended way to interact with the notebook. _You need a google account to use this option_

taxonomic_dist_by_soil_layer/README.md

@@ -1,11 +1,11 @@
 # Taxonomic Distribution of Contigs by Soil Layer in Colorado
 
-This folder includes one notebook (in Python) that explores how the taxonomic distribution of contigs differs by soil layer (M or O horizon) in Colorado using the [NMDC-runtime API](https://api.microbiomedata.org/docs#). More documentation on the NMDC-runtime API can be found [here](https://github.com/microbiomedata/NMDC_documentation/blob/main/docs/howto_guides/api_gui.md). This notebook is an example of using the NMDC metadata to access processed metagenome data that describes the taxa present. 
+This folder includes two notebooks, in R and Python that explore how the taxonomic distribution of contigs differs by soil layer (M or O horizon) in Colorado using the [NMDC-runtime API](https://api.microbiomedata.org/docs#). More documentation on the NMDC-runtime API can be found [here](https://github.com/microbiomedata/NMDC_documentation/blob/main/docs/howto_guides/api_gui.md). This notebook is an example of using the NMDC metadata to access processed metagenome data that describes the taxa present. 
 
 ## R
-- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/notebook_hackathons/blob/main/taxonomic_dist_by_soil_layer/R/taxonomic_dist_by_soil_layer_R.ipynb). _Viewing only, not editable_
-- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/notebook_hackathons/blob/main/taxonomic_dist_by_soil_layer/R/taxonomic_dist_by_soil_layer_R.ipynb). **Running this notebook in the colab interactive environment is not recommended due to long API calls**. _You need a google account to use this option_. 
+- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/nmdc_notebooks/blob/main/taxonomic_dist_by_soil_layer/R/taxonomic_dist_soil_layer_R.ipynb). _Viewing only, not editable_
+- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/nmdc_notebooks/blob/main/taxonomic_dist_by_soil_layer/R/taxonomic_dist_soil_layer_R.ipynb). **Running this notebook in the colab interactive environment is not recommended due to long API calls**. _You need a google account to use this option_. 
 
 ## Python
-- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/notebook_hackathons/blob/main/taxonomic_dist_by_soil_layer/python/taxonomic_dist_soil_layer.ipynb). _Viewing only, not editable_
-- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/notebook_hackathons/blob/main/taxonomic_dist_by_soil_layer/python/taxonomic_dist_soil_layer.ipynb).  **Running this notebook in the colab interactive environment is not recommended due to long API calls**. _You need a google account to use this option_. 
+- [Static rendered Jupyter notebook](https://nbviewer.org/github/microbiomedata/nmdc_notebooks/blob/main/taxonomic_dist_by_soil_layer/python/taxonomic_dist_soil_layer.ipynb). _Viewing only, not editable_
+- [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/microbiomedata/nmdc_notebooks/blob/main/taxonomic_dist_by_soil_layer/python/taxonomic_dist_soil_layer.ipynb).  **Running this notebook in the colab interactive environment is not recommended due to long API calls**. _You need a google account to use this option_.