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oxy_stat_samp not rel_to_oxygen #934

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merged 3 commits into from
Jun 1, 2023
Merged

oxy_stat_samp not rel_to_oxygen #934

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fe8126d
#58 remove rel_to_oxygen
turbomam Jun 1, 2023
678e73e
oxy_stat_samp using it's own enum
turbomam Jun 1, 2023
03f5da1
tests pass
turbomam Jun 1, 2023
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6 changes: 3 additions & 3 deletions src/data/valid/Biosample-exhasutive.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -250,7 +250,7 @@ org_nitro:
has_raw_value: 4 micromole per liter
organism_count:
- has_raw_value: ATP
oxy_stat_samp: aerobe
oxy_stat_samp: aerobic
part_org_carb:
has_raw_value: 1.92 micromole per liter
perturbation:
Expand Down Expand Up @@ -375,7 +375,7 @@ light_regm:
has_raw_value: incandescent light;10 lux;450 nanometer
phosphate:
has_raw_value: 0.7 micromole per liter
#rel_to_oxygen

#samp_collec_method:
# has_raw_value: swabbing
samp_collec_method: swabbing
Expand Down Expand Up @@ -772,7 +772,7 @@ rel_air_humidity:
rel_humidity_out:
has_raw_value: xxx
rel_samp_loc: edge of car
rel_to_oxygen: aerobe
#rel_to_oxygen: aerobe
replicate_number: '1'
reservoir:
has_raw_value: xxx
Expand Down
2 changes: 1 addition & 1 deletion src/data/valid/Biosample-exhaustive-issue-796-bye-yq-for-7-4-10.yaml
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Expand Up @@ -173,7 +173,7 @@ org_nitro:
has_raw_value: 4 micromole per liter
organism_count:
- has_raw_value: ATP
oxy_stat_samp: aerobe
oxy_stat_samp: aerobic
part_org_carb:
has_raw_value: 1.92 micromole per liter
perturbation:
Expand Down
5 changes: 2 additions & 3 deletions src/data/valid/Database-biosample-exhasutive.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -251,7 +251,7 @@ biosample_set:
has_raw_value: 4 micromole per liter
organism_count:
- has_raw_value: ATP
oxy_stat_samp: aerobe
oxy_stat_samp: aerobic
part_org_carb:
has_raw_value: 1.92 micromole per liter
perturbation:
Expand Down Expand Up @@ -376,7 +376,6 @@ biosample_set:
has_raw_value: incandescent light;10 lux;450 nanometer
phosphate:
has_raw_value: 0.7 micromole per liter
#rel_to_oxygen
#samp_collec_method:
# has_raw_value: swabbing
samp_collec_method: swabbing
Expand Down Expand Up @@ -773,7 +772,7 @@ biosample_set:
rel_humidity_out:
has_raw_value: xxx
rel_samp_loc: edge of car
rel_to_oxygen: aerobe
# rel_to_oxygen: aerobe
replicate_number: '1'
reservoir:
has_raw_value: xxx
Expand Down
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