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Fixing description fields in external_ids to be single valued
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cmungall committed Jan 7, 2022
1 parent 8a52878 commit 2e018c7
Showing 1 changed file with 9 additions and 18 deletions.
27 changes: 9 additions & 18 deletions src/schema/external_identifiers.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -86,8 +86,7 @@ slots:
- DDBJ SRA identifiers
pattern: "^insdc.sra:(E|D|S)RP[0-9]{6,}$"
multivalued: true
description:
- identifiers for corresponding project in INSDC SRA / ENA
description: identifiers for corresponding project in INSDC SRA / ENA
examples:
- value: https://identifiers.org/insdc.sra:SRP121659
description: Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 metatranscriptome
Expand All @@ -104,8 +103,7 @@ slots:
- NCBI bioproject identifiers
- DDBJ bioproject identifiers
pattern: "^bioproject:PRJ[DEN][A-Z][0-9]+$"
description:
- identifiers for corresponding project in INSDC Bioproject
description: identifiers for corresponding project in INSDC Bioproject
comments:
- these are distinct IDs from INSDC SRA/ENA project identifiers, but are usually(?) one to one
examples:
Expand All @@ -121,8 +119,7 @@ slots:
- GOLD identifiers
pattern: "^GOLD:Gs[0-9]+$"
multivalued: true
description:
- identifiers for corresponding project in GOLD
description: identifiers for corresponding project in GOLD
examples:
- value: https://identifiers.org/gold:Gs0110115
see_also:
Expand All @@ -131,8 +128,7 @@ slots:
MGnify project identifiers:
is_a: study identifiers
pattern: "^mgnify.proj:[A-Z]+[0-9]+$"
description:
- identifiers for corresponding project in MGnify
description: identifiers for corresponding project in MGnify
examples:
- value: https://identifiers.org/mgnify.proj:MGYS00005757

Expand All @@ -148,8 +144,7 @@ slots:
- GOLD identifiers
pattern: "^GOLD:Gb[0-9]+$"
multivalued: true
description:
- identifiers for corresponding sample in GOLD
description: identifiers for corresponding sample in GOLD
examples:
- value: https://identifiers.org/gold:GbTODO

Expand All @@ -163,8 +158,7 @@ slots:
- DDBJ biosample identifiers
pattern: "^biosample:SAM[NED]([A-Z])?[0-9]+$"
multivalued: true
description:
- identifiers for corresponding sample in INSDC
description: identifiers for corresponding sample in INSDC
examples:
- value: https://identifiers.org/biosample:SAMEA5989477
- value: https://identifiers.org/biosample:SAMD00212331
Expand All @@ -180,8 +174,7 @@ slots:
mixins:
- INSDC identifiers
pattern: "^biosample:(E|D|S)RS[0-9]{6,}$"
description:
- secondary identifiers for corresponding sample in INSDC
description: secondary identifiers for corresponding sample in INSDC
comments:
- ENA redirects these to primary IDs, e.g. https://www.ebi.ac.uk/ena/browser/view/DRS166340 -> SAMD00212331
- MGnify uses these as their primary sample IDs
Expand All @@ -201,8 +194,7 @@ slots:
- GOLD identifiers
pattern: "^GOLD:Gp[0-9]+$"
multivalued: true
description:
- identifiers for corresponding sequencing project in GOLD
description: identifiers for corresponding sequencing project in GOLD
examples:
- value: https://identifiers.org/gold:Gp0108335

Expand All @@ -225,8 +217,7 @@ slots:
- GOLD identifiers
pattern: "^GOLD:Ga[0-9]+$"
multivalued: true
description:
- identifiers for corresponding analysis project in GOLD
description: identifiers for corresponding analysis project in GOLD
examples:
- value: https://identifiers.org/gold:GaTODO

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