Fix handling of GOLD and JGI IDs in submission data translator

[pkalita-lbl]

These changes update the submission portal data translator to place the JGI proposal ID into the jgi_portal_study_identifiers slot on Study. Previously it was placing it in alternative_identifiers, which is all that was available when the translation code was originally written.

Details

Additional minor changes:

• Previously the submission portal data translator was prepending the prefix GOLD: to GOLD study IDs. This has been updated to gold:.
• The Translator._get_curie() method has been renamed to Translator._ensure_curie(). The behavior and calling semantics have been changed a bit to clarify that it will not add a prefix if the provided identifier already has one. See test cases in tests/test_data/test_translator.py for examples.
• tests/test_data/test_submission_portal_translator_data.yaml has been updated with GOLD and JGI IDs to exercise the updated code.

Related issue(s)

These issues were uncovered while working on microbiomedata/issues#888

Related subsystem(s)

• Runtime API (except the Minter)
• Minter
• Dagster
• Project documentation (in the docs directory)
• MongoDB migrations
• Other

Testing

• I tested these changes (explain below)
• I did not test these changes

Added/updated automated tests

Documentation

• I have not checked for relevant documentation yet (e.g. in the docs directory)
• I have updated all relevant documentation so it will remain accurate
• Other (explain below)

N/A

Maintainability

• Every Python function I defined includes a docstring (test functions are exempt from this)
• Every Python function parameter I introduced includes a type hint (e.g. study_id: str)
• All "to do" or "fix me" Python comments I added begin with either # TODO or # FIXME
• I used black to format all the Python files I created/modified
• The PR title is in the imperative mood (e.g. "Do X") and not the declarative mood (e.g. "Does X" or "Did X")

[sujaypatil96]

Apologies for looking at this PR so late. I just looked over the changes being made to add JGI IDs on the appropriate slot and correcting the GOLD IDs to be prefixed with gold:. The changes look great!