Move migration-related files into new top-level db/migrations/ folder

microbiomedata · Dec 6, 2024 · a04a949 · a04a949
1 parent 55c7f94
commit a04a949
Show file tree

Hide file tree

Showing 24 changed files with 6 additions and 6 deletions.
diff --git a/demo/metadata_migration/notebooks/.gitignore → db/migrations/notebooks/.gitignore b/demo/metadata_migration/notebooks/.gitignore → db/migrations/notebooks/.gitignore
diff --git a/...migration/notebooks/.notebook.env.example → ...igrations/notebooks/.notebook.env.example b/...migration/notebooks/.notebook.env.example → ...igrations/notebooks/.notebook.env.example
diff --git a/...etadata_migration/notebooks/bookkeeper.py → db/migrations/notebooks/bookkeeper.py b/...etadata_migration/notebooks/bookkeeper.py → db/migrations/notebooks/bookkeeper.py
diff --git a/demo/metadata_migration/notebooks/helpers.py → db/migrations/notebooks/helpers.py b/demo/metadata_migration/notebooks/helpers.py → db/migrations/notebooks/helpers.py
diff --git a/...ation/notebooks/manual_test_bookkeeper.py → ...tions/notebooks/manual_test_bookkeeper.py b/...ation/notebooks/manual_test_bookkeeper.py → ...tions/notebooks/manual_test_bookkeeper.py
@@ -12,7 +12,7 @@
 from pymongo.database import Database
 from nmdc_schema.migrators.migrator_base import MigratorBase
 
-from demo.metadata_migration.notebooks.bookkeeper import Bookkeeper, MigrationEvent
+from db.migrations.notebooks.bookkeeper import Bookkeeper, MigrationEvent
 
 # Consume environment variables.
 MONGO_HOST: str = os.getenv("MONGO_HOST", "localhost")
@@ -36,7 +36,7 @@ class TestBookkeeper(unittest.TestCase):
     Tests targeting the `Bookkeeper` class.
 
     You can format this file like this:
-    $ python -m black demo/metadata_migration/notebooks/manual_test_bookkeeper.py
+    $ python -m black db/migrations/notebooks/manual_test_bookkeeper.py
 
     You can start up a containerized MongoDB server like this:
     $ docker run --rm --detach --name mongo-test-migration-bookkeeper -p 27017:27017 mongo
@@ -45,7 +45,7 @@ class TestBookkeeper(unittest.TestCase):
     - host.docker.internal:27017
 
     You can run these tests like this:
-    $ python -m unittest -v demo/metadata_migration/notebooks/manual_test_bookkeeper.py
+    $ python -m unittest -v db/migrations/notebooks/manual_test_bookkeeper.py
 
     Reference: https://docs.python.org/3/library/unittest.html#basic-example
     """

diff --git a/.../notebooks/migrate_10_0_0_to_10_1_4.ipynb → .../notebooks/migrate_10_0_0_to_10_1_4.ipynb b/.../notebooks/migrate_10_0_0_to_10_1_4.ipynb → .../notebooks/migrate_10_0_0_to_10_1_4.ipynb
diff --git a/.../notebooks/migrate_10_3_0_to_10_4_0.ipynb → .../notebooks/migrate_10_3_0_to_10_4_0.ipynb b/.../notebooks/migrate_10_3_0_to_10_4_0.ipynb → .../notebooks/migrate_10_3_0_to_10_4_0.ipynb
diff --git a/.../notebooks/migrate_10_4_0_to_10_9_1.ipynb → .../notebooks/migrate_10_4_0_to_10_9_1.ipynb b/.../notebooks/migrate_10_4_0_to_10_9_1.ipynb → .../notebooks/migrate_10_4_0_to_10_9_1.ipynb
diff --git a/.../notebooks/migrate_10_9_1_to_11_0_0.ipynb → .../notebooks/migrate_10_9_1_to_11_0_0.ipynb b/.../notebooks/migrate_10_9_1_to_11_0_0.ipynb → .../notebooks/migrate_10_9_1_to_11_0_0.ipynb
diff --git a/.../notebooks/migrate_11_0_0_to_11_0_1.ipynb → .../notebooks/migrate_11_0_0_to_11_0_1.ipynb b/.../notebooks/migrate_11_0_0_to_11_0_1.ipynb → .../notebooks/migrate_11_0_0_to_11_0_1.ipynb
diff --git a/.../notebooks/migrate_11_0_3_to_11_1_0.ipynb → .../notebooks/migrate_11_0_3_to_11_1_0.ipynb b/.../notebooks/migrate_11_0_3_to_11_1_0.ipynb → .../notebooks/migrate_11_0_3_to_11_1_0.ipynb
diff --git a/...on/notebooks/migrate_7_7_2_to_7_8_0.ipynb → ...ns/notebooks/migrate_7_7_2_to_7_8_0.ipynb b/...on/notebooks/migrate_7_7_2_to_7_8_0.ipynb → ...ns/notebooks/migrate_7_7_2_to_7_8_0.ipynb
diff --git a/...on/notebooks/migrate_7_8_0_to_8_0_0.ipynb → ...ns/notebooks/migrate_7_8_0_to_8_0_0.ipynb b/...on/notebooks/migrate_7_8_0_to_8_0_0.ipynb → ...ns/notebooks/migrate_7_8_0_to_8_0_0.ipynb
diff --git a/...on/notebooks/migrate_8_0_0_to_8_1_2.ipynb → ...ns/notebooks/migrate_8_0_0_to_8_1_2.ipynb b/...on/notebooks/migrate_8_0_0_to_8_1_2.ipynb → ...ns/notebooks/migrate_8_0_0_to_8_1_2.ipynb
diff --git a/...on/notebooks/migrate_8_1_2_to_9_0_4.ipynb → ...ns/notebooks/migrate_8_1_2_to_9_0_4.ipynb b/...on/notebooks/migrate_8_1_2_to_9_0_4.ipynb → ...ns/notebooks/migrate_8_1_2_to_9_0_4.ipynb
diff --git a/...on/notebooks/migrate_9_0_4_to_9_1_0.ipynb → ...ns/notebooks/migrate_9_0_4_to_9_1_0.ipynb b/...on/notebooks/migrate_9_0_4_to_9_1_0.ipynb → ...ns/notebooks/migrate_9_0_4_to_9_1_0.ipynb
diff --git a/...on/notebooks/migrate_9_1_0_to_9_2_0.ipynb → ...ns/notebooks/migrate_9_1_0_to_9_2_0.ipynb b/...on/notebooks/migrate_9_1_0_to_9_2_0.ipynb → ...ns/notebooks/migrate_9_1_0_to_9_2_0.ipynb
diff --git a/...n/notebooks/migrate_9_3_2_to_10_0_0.ipynb → ...s/notebooks/migrate_9_3_2_to_10_0_0.ipynb b/...n/notebooks/migrate_9_3_2_to_10_0_0.ipynb → ...s/notebooks/migrate_9_3_2_to_10_0_0.ipynb
diff --git a/...on/notebooks/migrate_A_B_C_to_X_Y_Z.ipynb → ...ns/notebooks/migrate_A_B_C_to_X_Y_Z.ipynb b/...on/notebooks/migrate_A_B_C_to_X_Y_Z.ipynb → ...ns/notebooks/migrate_A_B_C_to_X_Y_Z.ipynb
diff --git a/...ngosh-scripts/restore-privileges.mongo.js → ...ngosh-scripts/restore-privileges.mongo.js b/...ngosh-scripts/restore-privileges.mongo.js → ...ngosh-scripts/restore-privileges.mongo.js
diff --git a/...ongosh-scripts/revoke-privileges.mongo.js → ...ongosh-scripts/revoke-privileges.mongo.js b/...ongosh-scripts/revoke-privileges.mongo.js → ...ongosh-scripts/revoke-privileges.mongo.js
diff --git a/...data_migration/notebooks/requirements.txt → db/migrations/notebooks/requirements.txt b/...data_migration/notebooks/requirements.txt → db/migrations/notebooks/requirements.txt
diff --git a/...adata_migration/notebooks/stakeholders.md → db/migrations/notebooks/stakeholders.md b/...adata_migration/notebooks/stakeholders.md → db/migrations/notebooks/stakeholders.md
diff --git a/...adata_migration/notebooks/test_helpers.py → db/migrations/notebooks/test_helpers.py b/...adata_migration/notebooks/test_helpers.py → db/migrations/notebooks/test_helpers.py
@@ -2,18 +2,18 @@
 from tempfile import NamedTemporaryFile as TempFile, mkdtemp
 import shutil
 
-from demo.metadata_migration.notebooks.helpers import Config
+from db.migrations.notebooks.helpers import Config
 
 
 class TestConfig(unittest.TestCase):
     r"""
     Tests targeting the `Config` class.
 
     You can format this file like this:
-    $ python -m black demo/metadata_migration/notebooks/test_helpers.py
+    $ python -m black db/migrations/notebooks/test_helpers.py
 
     You can run these tests like this:
-    $ python -m unittest -v demo/metadata_migration/notebooks/test_helpers.py
+    $ python -m unittest -v db/migrations/notebooks/test_helpers.py
 
     Reference: https://docs.python.org/3/library/unittest.html#basic-example
     """