Merge pull request #853 from microbiomedata/issue-837 #945
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# This workflow will install Python dependencies, run tests and lint with a single version of Python | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: Python application | |
# Note: The following events will trigger this workflow: | |
# 1. Someone pushes a commit to `main` that includes changes to any of the listed files. | |
# 2. Someone opens a pull request that includes changes to any of the listed files. | |
# 3. Someone clicks the "Run workflow" button on the "Actions" tab on GitHub. | |
# | |
# References: | |
# - https://docs.github.com/en/actions/writing-workflows/choosing-when-your-workflow-runs/triggering-a-workflow#example-including-paths | |
# - https://docs.github.com/en/actions/writing-workflows/workflow-syntax-for-github-actions#filter-pattern-cheat-sheet | |
# | |
on: | |
push: | |
branches: [ main ] | |
paths: | |
- '.github/workflows/python-app.yml' | |
- 'Makefile' | |
- '**.Dockerfile' | |
- '**.py' | |
- 'requirements/main.txt' | |
# Every file in the `data` directory or in any of its subdirectories: | |
- 'metadata-translation/notebooks/data/**' | |
pull_request: | |
paths: | |
- '.github/workflows/python-app.yml' | |
- 'Makefile' | |
- '**.Dockerfile' | |
- '**.py' | |
- 'requirements/main.txt' | |
- 'metadata-translation/notebooks/data/**' | |
# Allow developers to trigger this workflow manually via the "Actions" page on GitHub. | |
# Reference: https://docs.github.com/en/actions/managing-workflow-runs-and-deployments/managing-workflow-runs/manually-running-a-workflow | |
workflow_dispatch: { } | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 # update version to maintain consistency across workflows | |
- name: Set up Python 3.10 | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
# deprecated: Consider merging python.app.yml and lint.yml | |
# - name: Lint with flake8 | |
# run: | | |
# pip install flake8 | |
# make lint | |
- name: Test with pytest | |
run: | | |
make up-test | |
make test |