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download don't build released envo.db #31

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Feb 16, 2024
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download don't build released envo.db #31

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20 changes: 11 additions & 9 deletions data-vs-ontology-reports.Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -35,15 +35,17 @@ data-vs-ontology-reports/report-class-ids.tsv: downloads/envo.owl
--input $< \
--query $(subst .tsv,.rq,$(subst data-vs-ontology-reports,data-vs-ontology-sparql,$@)) $@

# requires a newer version of relation-graph from the rest of this repo?! Like 2+
# sbt is required for building relation-graph
# requires sqlite. ubuntu calls sqlite3 sqlite3 and an alisa/link is required
# requires robot
# building rdftab.rs requires rustup
downloads/envo.db: downloads/envo.owl
@echo "Converting..."
cd $(dir $@) ; $(RUN) semsql make $(notdir $@)

## requires relation-graph 2+, but the ontology build requires ~ 1.2
## sbt is required for building relation-graph
## requires sqlite. ubuntu calls sqlite3 'sqlite3' (not 'sqlite') and an alias/link is required
## requires robot
## building rdftab.rs requires rustup
#downloads/envo.db: downloads/envo.owl
# @echo "Converting..."
# cd $(dir $@) ; $(RUN) semsql make $(notdir $@)

downloads/envo.db:
poetry run semsql download envo -o $@

downloads/envo-idranges.owl.omn:
@echo "Downloading..."
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