Merge pull request #41 from microbiomedata/38-report-all-valid-biomes…

…-and-environmental-mediums see problematic_triad_* files for FMA problems
microbiomedata · Feb 16, 2024 · e33b9c5 · e33b9c5
2 parents 9d92887 + 38c075b
commit e33b9c5
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diff --git a/data-vs-ontology-reports.Makefile b/data-vs-ontology-reports.Makefile
@@ -81,8 +81,8 @@ data-vs-ontology-reports/biosample-triad-counts.tsv:
 		--output $(subst counts.tsv,report.tsv,$@)  \
 		--counts-output $@
 
-data-vs-ontology-reports/fma-usage-report.tsv: data-vs-ontology-reports/biosample-triad-counts.tsv
-	grep 'FMA:' $< > $@
+#data-vs-ontology-reports/fma-usage-report.tsv: data-vs-ontology-reports/biosample-triad-counts.tsv
+#	grep 'FMA:' $< > $@
 
 data-vs-ontology-reports/nmdco-envo-classes-with-id-owner.tsv: data-vs-ontology-reports/envo-id-ranges-report.tsv nmdco-classes.json
 	$(RUN) report-nmdco-envo-classes-by-id-owners \

diff --git a/data-vs-ontology-reports/fma-usage-report.tsv b/data-vs-ontology-reports/fma-usage-report.tsv