add data assets and prepare for local/.env

assets/extension_report.yaml

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+Agriculture:
+  description: A collection of terms appropriate when sequencing samples obtained
+    in an agricultural environment.  Suitable to capture metadata appropriate to enhance
+    crop productivity and agroecosystem health  with the aim to facilitate research
+    of agricultural microbiomes and their relationships to plant productivity  and
+    sustainable crop production from diverse crop management contexts.
+  title: agriculture
+  use_cases: Agricultural Microbiomes Research Coordination Network, model cropping
+    and plant systems focused on agricultural plant and soil microbe; microbiome studies
+    in agricultural sites; long-term ecological research in croplands; eDNA in manure
+    samples; describing agricultural microbiome studies
+Air:
+  description: A collection of terms appropriate when collecting and sequencing obtained
+    from a gaseous environment.
+  title: air
+  use_cases: bioaerosol samples, pathogen load in urban air, aerosols
+BuiltEnvironment:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples obtained in the  built-up environment, which includes terms for surface
+    material, humidity, temperature, moisture and  occupancy type along with specific
+    metadata terms describing the indoor air, building and sample properties.
+  title: built environment
+  use_cases: microbiology studies of the built environment, NASA space station sampling,
+    MetaSUB transit system sampling, home, hospitals, office buildings
+FoodAnimalAndAnimalFeed:
+  comments: This extension is intended to work alongside the other food extensions
+    (farm environment, food production facility, and human foods) for capturing contextual
+    data across the food supply-chain environment.
+  description: A collection of terms appropriate when collecting samples and performing
+    sequencing of samples  obtained from farm animals and their feed.
+  title: food-animal and animal feed
+  use_cases: Microbiome of farm animals, their feed, and pet food.
+FoodFarmEnvironment:
+  comments: This extension is intended to work alongside the other food extensions
+    (animals and animal feed, food production facility, and human foods) for capturing
+    contextual data across the food supply-chain environment.
+  description: A collection of terms appropriate when collecting samples and performing
+    sequencing of samples  obtained from the farm environment, including soil, manure,
+    and food harvesting equipment.
+  title: food-farm environment
+  use_cases: Microbiome of farm and field crops as well as environmental samples including
+    irrigation, soil amendments, and farm equipment.
+FoodFoodProductionFacility:
+  comments: This extension is intended to work alongside the other food extensions
+    (animals and animal feed, farm environment, and human foods) for capturing contextual
+    data across the food supply-chain environment.
+  description: A collection of terms appropriate when collecting samples and performing
+    sequencing of samples  obtained from food production facilities.
+  title: food-food production facility
+  use_cases: Microbiome of food production facilities/factories
+FoodHumanFoods:
+  comments: This extension is intended to work alongside the other food extensions
+    (animals and animal feed, farm environment, and food production facilities) for
+    capturing contextual data across the food supply-chain environment.
+  description: A collection of terms appropriate when collecting samples and performing
+    sequencing of samples  obtained from human food products.
+  title: food-human foods
+  use_cases: Microbiome of foods intended for human consumption.
+HostAssociated:
+  comments: This is a very broad package, intended to capture many kinds of sequences
+    derived from the bodies of or derived from an organism. Where possible, please
+    use a more specific package. For example, consider using food-animal and animal
+    feed extension for sampling of farm animals reared for consumption. For human
+    stool microbiomes, consider MIxS-human-gut. Incidental associations of environmental
+    material with an organism may also be better served by other packages. For example,
+    nucleic acids derived from soil that was sampled from the hoof of a cow may be
+    better described by terms from the soil extension; however, soil embedded in a
+    wound on a cow's leg would be best described by terms in this extension
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from a non-human host, to examine the host-associated microbiome
+    or genome.
+  title: host-associated
+  use_cases: elephant fecal matter or cat oral cavity
+HumanAssociated:
+  comments: For stool samples use MIxS-human-gut extension.
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from a person to examine their human-associated microbiome or
+    genome,  that does not have a specific extension (e.g., skin, gut, vaginal).
+  title: human-associated
+  use_cases: blood samples or biopsy samples.
+HumanGut:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from a person to examine their oral-associated microbiome.
+  title: human-gut
+  use_cases: human stool or fecal samples, or samples collected directly from the
+    gut.
+HumanOral:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from a person to examine their oral-associated microbiome.
+  title: human-oral
+  use_cases: mouth swab sampling, dental microbiome samples, microbiome of oral swabs,
+    nasal, mouth, throat, teeth, tongue microbiome studies
+HumanSkin:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from a person to examine their skin-associated microbiome.
+  title: human-skin
+  use_cases: swab samples taken on a person's skin surface.
+HumanVaginal:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from a person to examine their vaginal-associated microbiome.
+  title: human-vaginal
+  use_cases: vaginal swabbing
+HydrocarbonResourcesCores:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from environments pertaining to hydrocarbon resources, specifically
+    core samples.
+  title: hydrocarbon resources-cores
+  use_cases: The microbial characterization of hydrocarbon occurrences, defined as
+    the natural and artificial environmental features that are rich in hydrocarbons,
+    from hydrocarbon rich formations, such as reservoir cores.
+HydrocarbonResourcesFluidsSwabs:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from environments pertaining to hydrocarbon resources, specifically
+    run-off liquids samples and swabs.
+  title: hydrocarbon resources-fluids/swabs
+  use_cases: The microbial characterization of hydrocarbon occurrences,  defined as
+    the natural and artificial environmental features that are rich in hydrocarbons,
+    from hydrocarbon resource fluids.
+MicrobialMatBiofilm:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from biofilm environments including microbial mats.
+  title: microbial mat/biofilm
+  use_cases: samples from microbial mats at cold seeps
+MiscellaneousNaturalOrArtificialEnvironment:
+  description: A collection of generic terms appropriate when collecting and sequencing
+    samples  obtained from environments, where there is no specific extension already
+    available.
+  title: miscellaneous natural or artificial environment
+PlantAssociated:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from a plant to examine it's plant-associated microbiome.
+  title: plant-associated
+  use_cases: plant surface swabs, root soil or rhizosphere, cultivated plants, plant
+    phenotyping
+Sediment:
+  comments: Sedimentary layers in terrestrial environments will probably be better
+    served by the soil extension.
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from the sedimentary area of aquatic environments.
+  title: sediment
+  use_cases: river bed or sea floor.
+Soil:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from the uppermost layer of Earth's crust, contributed by the
+    Terragenome Consortium.
+  title: soil
+  use_cases: soil collection, island microbiome sampling, farm land or forest floor.
+SymbiontAssociated:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from an organism that lives in close association with any other
+    organism(s).
+  title: symbiont-associated
+  use_cases: the microbiome sequence of a flea sampled from a farm animal
+WastewaterSludge:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    samples  obtained from any solid, semisolid or liquid waste.
+  title: wastewater/sludge
+  use_cases: sewerage or industrial wastewater
+Water:
+  description: A collection of terms appropriate when collecting samples and sequencing
+    water samples  obtained from any aquatic environment.
+  title: water
+  use_cases: sea or river water, global ocean sampling day