Merge pull request #34 from microbiomedata/19-ensure-that-envo-terms-…

…requested-by-nmdc-in-the-past-year-make-it-into-nmdco report of EnvO classes in NMDCO by id owner
microbiomedata · Feb 16, 2024 · 740bc8d · 740bc8d
2 parents 74a4ce3 + 678219c
commit 740bc8d
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diff --git a/data-vs-ontology-reports.Makefile b/data-vs-ontology-reports.Makefile
@@ -6,11 +6,12 @@ ENVO_SEMSQL=downlaods/envo.db
 
 
 data-vs-ontology-all: data-vs-ontology-clean \
+	data-vs-ontology-reports/report-class-ids.tsv \
+	downloads/envo.db \
+	data-vs-ontology-reports/report-id-ranges.tsv \
 	data-vs-ontology-reports/envo-id-ranges-report.tsv \
 	data-vs-ontology-reports/fma-usage-report.tsv \
-	data-vs-ontology-reports/report-class-ids.tsv \
-	data-vs-ontology-reports/report-id-ranges.tsv
-
+	data-vs-ontology-reports/nmdco-envo-classes-with-id-owner.tsv
 
 data-vs-ontology-clean:
 	rm -rf data-vs-ontology-reports/*
@@ -80,4 +81,11 @@ data-vs-ontology-reports/biosample-triad-counts.tsv:
 		--counts-output $@
 
 data-vs-ontology-reports/fma-usage-report.tsv: data-vs-ontology-reports/biosample-triad-counts.tsv
-	grep 'FMA:' $< > $@
+	grep 'FMA:' $< > $@
+
+data-vs-ontology-reports/nmdco-envo-classes-with-id-owner.tsv: data-vs-ontology-reports/envo-id-ranges-report.tsv nmdco-classes.json
+	$(RUN) report-nmdco-envo-classes-by-id-owners \
+		--id-range-tsv-input $(word 1,$^) \
+		--nmdco-classes-json-input $(word 2,$^) \
+		--output $@
+