Merge pull request #57 from microbiomedata/49-subclassof-cycles-in-nm…

…dco-classesjson-breaks-the-nmdc-server-ingest tidy up robot remove output
microbiomedata · Mar 21, 2024 · 1f39ba1 · 1f39ba1
2 parents c18f115 + e27a594
commit 1f39ba1
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -204,8 +204,7 @@ $(ONT)-merged.owl: $(SRC) $(IMPORT_FILES) imports/uberon_import.owl
 	robot remove --input [email protected] \
 	    --select "owl:deprecated='true'^^xsd:boolean" \
 	    remove --term CHEBI:50906 --term BFO:0000023 --select self --axioms equivalent --axioms subclass --trim false \
-	    remove --select "CARO:*"  --output  removed.owl \
-	    --output $@
+	    remove --select "CARO:*" --output $@
 # clean up
 	rm -f [email protected]