Update nmdc.yaml

changed spectral_count and sum_MASIC_abundances to peptide_ and protein_ specific to reduce name collision and confusion, added peptide_sequence_count to protein quantification section

schema/nmdc.yaml

@@ -426,11 +426,11 @@ classes:
         description: >-
           smallest Q-Value associated with the peptide sequence as provided by MSGFPlus tool
         range: float
-      spectral_count:
+      peptide_spectral_count:
         description: >-
           sum of filter passing MS2 spectra associated with the peptide sequence within a given LC-MS/MS data file
         range: integer
-      sum_masic_abundance:
+      peptide_sum_masic_abundance:
         description: >-
           combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the peptide sequence from a given LC-MS/MS data file using the MASIC tool
         range: integer
@@ -448,11 +448,15 @@ classes:
           the grouped list of protein identifiers associated with the peptide sequences that were grouped to a best protein
         range: gene product
         multivalued: true
-      spectral_count:
+      peptide_sequence_count:
+        description: >-
+          count of peptide sequences grouped to the best_protein
+        range: integer
+      protein_spectral_count:
         description: >-
           sum of filter passing MS2 spectra associated with the best protein within a given LC-MS/MS data file
         range: integer
-      sum_masic_abundance:
+      protein_sum_masic_abundance:
         description: >-
           combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the best protein from a given LC-MS/MS data file using the MASIC tool
         range: integer