Add lipid workflow to wdl checker

microbiomedata · Oct 1, 2024 · b8ca5b4 · b8ca5b4
1 parent 0eb5696
commit b8ca5b4
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/.github/workflows/wdl_checker.yml b/.github/workflows/wdl_checker.yml
@@ -22,7 +22,11 @@ jobs:
         python -m pip install --upgrade pip
         pip install miniwdl
 
-    - name: Run MiniWDL
+    - name: Run GCMS MiniWDL
       run: |
         # Add the commands to run your MiniWDL workflow
-        miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files
+        miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files
+    
+    - name: Run LCMS Lipid MiniWDL
+      run: |
+        miniwdl run wdl/metaMS_lcms_lipid.wdl configuration/lipidomics_metams.toml